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Detailed information on CNT30171320


BLAST search results

BLAST vs Swiss-Prot:
sp|P51088|CHS6_TRISU, E-value = 2e-96

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30195656Trifolium pratensePisum sativum97.236.6590.87416forward
CNT3045136Trifolium pratensePrunus dulcis92.9963.9979.15398forward
CNT30156261Trifolium pratensePistacia vera78.2744.3782.99335forward
CNT3096581Trifolium pratenseSolanum tuberosum75.2317.2478.26322forward
CNT30143557Trifolium pratenseMedicago truncatula10040.8893.22428forward
CNT3074040Trifolium pratenseBrassica juncea32.013180.29137forward
CNT30610059Trifolium pratenseGossypium raimondii88.5555.4980.21379forward
CNT30646903Trifolium pratenseRosa chinensis60.7519.6783.46260forward
CNT30355633Trifolium pratenseLactuca sativa27.121.2585.34116forward
CNT30151821Trifolium pratensePrunus persica92.9969.178.39398forward
CNT30705527Trifolium pratensePrunus avium54.4450.3281.12233forward
CNT30645210Trifolium pratenseCannabis sativa86.9249.1480.11372forward
CNT3022840Trifolium pratensePopulus trichocarpa99.0743.5380.42424forward
CNT30114123Trifolium pratenseFicus carica70.5618.7981.13302forward

Expression of CNT30171320

Peptides detected in this lncRNA

>peptide 1 (59 aa)
GPRNVTAVTSEQTTKTRAPLLFSAKSLAKRSTVPPAKQPCWYIIYLLTYGRRPKSFVSW*

>peptide 2 (37 aa)
MSCLASNEGAMYSQRLGFSFKISSVKYMYLLLIIDLSP

Sequence

>CNT30171320
GGGCCGCGAAATGTGACTGCGGTGACTTCAGAGCAAACAACTAAAACACGAGCACCTTTGTTGTTCTCGGCTAAATCTTTAGCCAAACGAAGCACCGTGC
CTCCTGCAAAACAACCTTGTTGGTACATCATATACCTTTTGACATATGGGCGAAGGCCTAAGAGTTTTGTGAGTTGGTAATCGGCTCCAGGCATATCAAC
ACCACTTGTGGTGCAAAAGATTAAGTGAGTAATCTTTGACTTTGGTTGACCCCATTCTTTAATAGCCTTCACTGCAGCCTCTTTTCCAAGTCTAGGTACC
TCTACCACAACCATGTCTTGCCTAGCATCCAATGAAGGTGCCATGTATTCACAAAGACTAGGATTTTCTTTCAAAATCTCTTCTGTTAAATACATGTATC
TACTCTTGATCATAGATTTATCACCTGA