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Detailed information on CNT30171234


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 3e-64

BLAST vs NONCODE:
NONMTRT001605, E-value = 4e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3060679Trifolium pratenseArabidopsis lyrata20.1419.3388.79116forward

Expression of CNT30171234

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MQHIFGVILAHFPGAKFVAKAQALLLTGSARWSARFSIGPFPVTIA*

>peptide 2 (45 aa)
NKKNVVETDMLVEILEEPITIPLGFIRFDKGLIALHNHHIIIHIH*

>peptide 3 (31 aa)
MGRSSLQGRVGRQLLQEVRQQYGNPPQLPLG*

Sequence

>CNT30171234
AAAACAAAAAAAATGTAGTTGAAACTGACATGCTAGTAGAGATTTTGGAAGAACCAATTACAATACCTTTGGGTTTCATTAGATTTGATAAAGGGCTTAT
AGCTTTGCATAATCATCATATCATAATTCACATTCATTGAAGAAACACCTAAATGCACCAAATATTTAACTAAACTAAATTAACAATAAGAAATTCACAC
TCTGATATGCAACACATTTTTGGTGTAATTTTAGCTCACTTTCCGGGGGCAAAGTTTGTGGCGAAGGCCCAAGCATTGTTGTTAACTGGGTCAGCAAGGT
GGTCAGCAAGATTTTCTATAGGACCTTTTCCGGTTACAATAGCTTGAACGAAGAATCCAAACATAGAGAACATAGCTAACCTACCATTTTTTAGTTCTTT
CACCTTTAACTCCGCAAAAGCCTCGGGGTCTTCAGCGAGGCCTAATGGGTCGAAGCTCCCTCCAGGGTAGAGTGGGTCGACAACTTCTCCAAGAGGTCCG
CCAGCAATACGGTAACCCTCCACAGCTCCCATTAGGATAACTTGGACAGCCCAGATAGCAAGGATACTTTGTGCGT