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Detailed information on CNT30171188


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30169891Trifolium pratensePistacia vera43.6840.4585.23684forward
CNT30636043Trifolium pratenseCapsicum annuum44.4444.5684.05696forward
CNT30510145Trifolium pratenseSolanum lycopersicum45.0849.5885.55706forward
CNT3077671Trifolium pratenseBrassica juncea44.3271.3383.86694forward
CNT3025196Trifolium pratensePopulus trichocarpa29.6965.8687.31465forward

Expression of CNT30171188

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

>peptide 2 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVSVFTKICICRISKNN*

>peptide 3 (39 aa)
MASPKHLLLMIVHIYMNSLIKGHKHPRSLLQTKSNHEIT*

>peptide 4 (77 aa)
MKRGLLLNIVISKSPSVFQLLSGEDETLLVRRNSFLVLDLGFDVVDGVRALHLKGDGLSGECFHEDLHLQNQQEQLN*

>peptide 5 (40 aa)
MVSELSTSKVMVLPVKVLTNICIPPLKRSTRWRVDSFWIL*

Sequence

>CNT30171188
CTTGTTGATGTTTTGAGAAACGTATGATTTGCATCTTAACTCAACAATGAACTAGGTTTTGTTTTATATCGAGCATATTGATTGATAAAATTTTCTGATA
CAAAGATGCAAAGTTTGGGAATAGCAGAAAAATGGCTTCACCAAAGCATCTATTGTTGATGATAGTTCACATTTACATGAATTCACTTATCAAAGGACAT
AAACATCCAAGATCACTTCTTCAAACAAAAAGCAATCACGAAATAACATAGCATAAAACTGTGAAATAAATTAAACACACTGATTACCATAAAGGGAAAG
TACTAAATTCATTATTCACAAAACCATAGAGTTCACAACAGACCAAATTTATTATAAAGGGCCATGATAGACCCTATTAACATCCAAAGTTGACAAATTC
ATTTCAAAACAACCAACAACACAGACAGAGTTCACAACCACAGCTTAAAAACCACCACGAAGACGGAGCACAAGGTGAAGAGTGGACTCCTTCTGGATAT
TGTAATCCGCAAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTT
GACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCATACCACCCCTCAAACGAAGCACA
AGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGA
TTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGAT
CTGCATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCG
AAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGG
TCTTTCCGGTGAGTGTTTTCACGAAGATTTGCATCTGCAGAATCAGCAAGAACAATTAAATTAGAATCAAACATCAGAACTTGAATTAAAACTTGACCTA
GAATCTACTAATCAGAATTTAACACCAAAAATCGAATTGAATCAAATATAACAGATCAAAACCAACGTTTAACAAACGTATCTGAAGAATTCGAAAAAAC
GCAAATAGTTTCGATCATATAAAGCGATAAATCAAACAGAATTTTATACAACAAATCAAAAACAGCGTTCAACAAACGGATCTAAAGAAATATAGACAGA
ATCCTTGTAGATTCGTTCATACAAAGCATGATCATGAACTCTACAAACAAAACCTAATCAAGGATTAAGAATTTCTAACACAAGCTATGAATCATATTAG
GTTCAGATCTGAGACAAATTCCAAAACAATTAACCGATACAAACCCTAACAAATCAATTTCTAACA