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Detailed information on CNT30171140


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 1e-112

BLAST vs NONCODE:
NONSTUT000620, E-value = 6e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506303Trifolium pratenseNicotiana attenuata28.2856.1885.19459forward

Expression of CNT30171140

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MASPKHLLLMIVHIYMNSLIKGHKHPRSLLQTKSNHEIT*

>peptide 2 (31 aa)
MVSELSTSKVMVLPVKVLTKICIPPLKRSTR*

>peptide 3 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVSVFTKICICRISKNN*

>peptide 4 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

>peptide 5 (77 aa)
MKRGLLLNIVISKSPSVFQLLSGEDETLLVRRNSFLVLDLGFDVVDGVRALHLKGDGLSGECFHEDLHLQNQQEQLN*

Sequence

>CNT30171140
ATCTTAACTCAACAATGAACTAGGTTTTGTTTTATATCGAGCATATTGATTGATAAAATTTTCTGATACAAAGATGCAAAGTTTGGGAATAGCAGAAAAA
TGGCTTCACCAAAGCATCTATTGTTGATGATAGTTCACATTTACATGAATTCACTTATCAAAGGACATAAACATCCAAGATCACTTCTTCAAACAAAAAG
CAATCACGAAATAACATAGCATAAAACTGTGAAATAAATTAAACACACTGATTACCATAAAGGGAAAGTACTAAATTCATTATTCACAAAACCATAGAGT
TCACAACAGACCAAATTTATTATAAAGGGCCATGATAGACCCTATTAACATCCAAAGTTGACAAATTCATTTCAAAACAACCAACAACACAGACAGAGTT
CACAACCACAGCTTAAAAACCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAAC
TGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTGGCCTTCACATTATCAATGGTATCTGAGCTCTCCACCT
CCAAGGTTATGGTCTTACCAGTCAAGGTCTTGACAAAAATCTGCATACCACCCCTCAAACGCAGCACAAGGTGAAGGAGCTTTCAACCTCAAGAGTAATA
GTCTTTCCGGTAAGGGTCTTCACAAAGATTTGCATACCACCACGAAGACGCAACACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAG
TACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGT
GTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGAC
TCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCT
GGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCATCTGCAGAAT
CAGCAAGAACAATTAAATTAGAATCAAACATCAGAACTTGAATTAAAACTTGACCTAGAATCTACTAATCAGAATTTAACACCAAAAATCGAATTGAATC
AAATATAACAGATCAAAACCAACGTTTAACAAACGTATCTGAAGAATTCGAAAAAACGCAAATAGTTTCGATCATATAAAGCGATAAATCAAACAGAATT
TTATACAACAAATCAAAAACAGCGTTCAACAAACGGATCTAAAGAAATATAGACAGAATCCTTGTAGATTCGTTCATACAAAGCATGATCATGAACTCTA
CAAACAAAACCTAATCAAGGATTAAGAATTTCTAACACAAGCTATGAATCATATTAGGTTCAGATCTGAGACAAATTCCAAAACAATTAACCGATACAAA
CCCTAACAAATCAATTTCTAACA