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Detailed information on CNT30171103


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-149

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30376918Trifolium pratenseArabidopsis thaliana33.780.9884.46579forward

Expression of CNT30171103

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MKRGLLLNIVISKSPSVFQLLSGEDETLLVRRNSFLVLDLGFDVVDGVRALHLKGDGLSGECFHEDLHLQNQQEQLN*

>peptide 2 (64 aa)
MVSELSTSKVMVLPVKVKSGLLLDIVIRKGPSIFQLFACKDQPLLIWGNTFLILDLSLDIVNGV*

>peptide 3 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVSVFTKICICRISKNN*

>peptide 4 (40 aa)
MVSELSTSKVMVLPVKVLTNICIPPLKRSTRWRVDSFWIL*

>peptide 5 (39 aa)
MASPKHLLLMIVHIYMNSLIKGHKHPRSLLQTKSNHEIT*

>peptide 6 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

Sequence

>CNT30171103
ATCTTAACTCAACAATGAACTAGGTTTTGTTTTATATCGAGCATATTGATTGATAAAATTTTCTGATACAAAGATGCAAAGTTTGGGAATAGCAGAAAAA
TGGCTTCACCAAAGCATCTATTGTTGATGATAGTTCACATTTACATGAATTCACTTATCAAAGGACATAAACATCCAAGATCACTTCTTCAAACAAAAAG
CAATCACGAAATAACATAGCATAAAACTGTGAAATAAATTAAACACACTGATTACCATAAAGGGAAAGTACTAAATTCATTATTCACAAAACCATAGAGT
TCACAACAGACCAAATTTATTATAAAGGGCCATGATAGACCCTATTAACATCCAAAGTTGACAAATTCATTTCAAAACAACCAACAACACAGACAGAGTT
CACAACCACAGCTTAAAAACCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAAC
TGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTGGCCTTCACATTATCAATGGTATCTGAGCTCTCCACCT
CCAAGGTTATGGTCTTACCAGTCAAGGTGAAGAGTGGACTCCTTCTGGATATTGTAATCCGCAAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGA
TCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATGGTCTT
ACCGGTCAAAGTCTTGACAAATATCTGCATACCACCCCTCAAACGAAGCACAAGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGG
CCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAG
AGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATCTGCATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTT
CTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATC
TTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGTGTTTTCACGAAGATTTGCATCTGCAGAATCAGCA
AGAACAATTAAATTAGAATCAAACATCAGAACTTGAATTAAAACTTGACCTAGAATCTACTAATCAGAATTTAACACCAAAAATCGAATTGAATCAAATA
TAACAGATCAAAACCAACGTTTAACAAACGTATCTGAAGAATTCGAAAAAACGCAAATAGTTTCGATCATATAAAGCGATAAATCAAACAGAATTTTATA
CAACAAATCAAAAACAGCGTTCAACAAACGGATCTAAAGAAATATAGACAGAATCCTTGTAGATTCGTTCATACAAAGCATGATCATGAACTCTACAAAC
AAAACCTAATCAAGGATTAAGAATTTCTAACACAAGCTATGAATCATATTAGGTTCAGATCTGAGACAAATTCCAAAACAATTAACCGATACAAACCCTA
ACAAATCAATTTCTAACA