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Detailed information on CNT30171101


BLAST search results

BLAST vs Swiss-Prot:
sp|P69325|UBIQP_SOYBN, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-133

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30274489Trifolium pratenseChenopodium quinoa54.974.5984.67913forward
CNT30405422Trifolium pratenseBeta vulgaris42.6974.1984.79710forward
CNT30526024Trifolium pratensePhaseolus vulgaris55.6269.9285.62925forward
CNT3044330Trifolium pratensePrunus dulcis54.974.6584.34913forward
CNT30157648Trifolium pratensePistacia vera55.0267.2384.48915forward
CNT30636126Trifolium pratenseCapsicum annuum55.5650.0883.23924forward
CNT3095105Trifolium pratenseSolanum tuberosum54.9678.6684.57914forward
CNT30538027Trifolium pratenseBrassica napus54.7848.0582.33911forward
CNT30238962Trifolium pratenseBrassica oleracea55.0847.3984.5916forward
CNT30311152Trifolium pratenseCamelina sativa55.0256.7383.83915forward
CNT3061767Trifolium pratenseArabidopsis lyrata55.0256.0382.4915forward
CNT3077383Trifolium pratenseBrassica juncea55.4471.1483.19922forward
CNT30264722Trifolium pratenseBrassica rapa55.4487.1583.08922forward
CNT30608677Trifolium pratenseGossypium raimondii54.970.6782.15913forward
CNT30229606Trifolium pratenseAnanas comosus54.9668.9883.81914forward
CNT30217431Trifolium pratenseKalanchoe fedtschenkoi55.0867.6583.3916forward
CNT30480747Trifolium pratenseArabidopsis halleri55.0278.8881.97915forward
CNT30359535Trifolium pratenseLactuca sativa54.7853.9484.08911forward
CNT30425514Trifolium pratensePapaver somniferum55.0265.9783.28915forward
CNT30704857Trifolium pratensePrunus avium54.9657.8884.79914forward
CNT30642231Trifolium pratenseCannabis sativa55.3286.7982.39920forward
CNT3025177Trifolium pratensePopulus trichocarpa41.6770.8684.27693forward
CNT30120580Trifolium pratenseCitrus clementina54.0682.483.54899forward
CNT30174617Trifolium pratenseVigna angularis53.783.3884.1893forward
CNT30111662Trifolium pratenseFicus carica53.6465.9883.63892forward
CNT3050777Trifolium pratenseCucumis sativus54.2492.8984.59902forward

Expression of CNT30171101

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MVSELSTSKVMVLPVKVLTKICIPPLKRSTR*

>peptide 2 (39 aa)
MASPKHLLLMIVHIYMNSLIKGHKHPRSLLQTKSNHEIT*

>peptide 3 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

>peptide 4 (77 aa)
MKRGLLLNIVISKSPSVFQLLSGEDETLLVRRNSFLVLDLGFDVVDGVRALHLKGDGLSGECFHEDLHLQNQQEQLN*

>peptide 5 (40 aa)
MVSELSTSKVMVLPVKVLTNICIPPLKRSTRWRVDSFWIL*

>peptide 6 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVSVFTKICICRISKNN*

Sequence

>CNT30171101
GCATCTTAACTCAACAATGAACTAGGTTTTGTTTTATATCGAGCATATTGATTGATAAAATTTTCTGATACAAAGATGCAAAGTTTGGGAATAGCAGAAA
AATGGCTTCACCAAAGCATCTATTGTTGATGATAGTTCACATTTACATGAATTCACTTATCAAAGGACATAAACATCCAAGATCACTTCTTCAAACAAAA
AGCAATCACGAAATAACATAGCATAAAACTGTGAAATAAATTAAACACACTGATTACCATAAAGGGAAAGTACTAAATTCATTATTCACAAAACCATAGA
AGTTCACAACCACAGCTTAAAAACCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTTCCATCCTC
CAACTGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTGGCCTTCACATTATCAATGGTATCTGAGCTCTCC
ACCTCCAAGGTTATGGTCTTACCAGTCAAGGTCTTGACAAAAATCTGCATACCACCCCTCAAACGCAGCACAAGGTGAAGAGTGGACTCCTTCTGGATAT
TGTAATCCGCAAGGGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTTATCCTGGATCTTAGCCTT
GACATTGTCAATGGTGTCTGAGCTCTCCACCTCCAAGGTTATGGTCTTACCGGTCAAAGTCTTGACAAATATCTGCATACCACCCCTCAAACGAAGCACA
AGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGA
TTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGAT
CTGCATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCG
AAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGG
TCTTTCCGGTGAGTGTTTTCACGAAGATTTGCATCTGCAGAATCAGCAAGAACAATTAAATTAGAATCAAACATCAGAACTTGAATTAAAACTTGACCTA
GAATCTACTAATCAGAATTTAACACCAAAAATCGAATTGAATCAAATATAACAGATCAAAACCAACGTTTAACAAACGTATCTGAAGAATTCGAAAAAAC
GCAAATAGTTTCGATCATATAAAGCGATAAATCAAACAGAATTTTATACAACAAATCAAAAACAGCGTTCAACAAACGGATCTAAAGAAATATAGACAGA
ATCCTTGTAGATTCGTTCATACAAAGCATGATCATGAACTCTACAAACAAAACCTAATCAAGGATTAAGAATTTCTAACACAAGCTATGAATCATATTAG
GTTCAGATCTGAGACAAATTCCAAAACAATTAACCGATACAAACCCTAACAAATCAATTTCTA