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Detailed information on CNT30171099


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30193415Trifolium pratenseSecale cereale25.326.1680.27147reverse complement
CNT30104396Trifolium pratenseOryza rufipogon25.313.6980.27147forward

Expression of CNT30171099

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MCRSPRMRFMPFEVAQHSFANHVVKLCLVFLINNIMFLKIHIKMNIKISFLLKKKLNS*

>peptide 2 (32 aa)
RCLSLFFFLTFYLLTCILKRALLPSTRINQQN*

Sequence

>CNT30171099
TAGATGTTTATCTTTATTTTTCTTTCTTACTTTTTATCTTCTAACATGCATTTTAAAAAGAGCATTGTTACCTAGTACAAGAATCAATCAACAAAATTAA
ATTTGACGAAGGTAGAAACCCTACCACACAAGGGACGTATGGTAATATAGAAAATATATGACGGATAAATTAGTAATAACAACTTTAAAGTAGTGCAATT
CTCAGTCCCTCTAGTCGGGTGGGCGCCAACCGGTCTTTCGACCAGATCGCCCTAAACACCGTATGTGCAGATCTCCTCGCATGCGGTTCATGCCATTCGA
GGTGGCCCAACATTCATTCGCTAATCATGTAGTGAAATTGTGTCTTGTCTTCCTAATAAACAATATTATGTTTTTAAAAATACACATAAAAATGAATATT
AAAATATCATTTCTCTTAAAAAAAAAGTTAAATTCTTAAATAATGATTGATCCCCAGCTATCTATGTTGAAATTGTGAGCTAGTTAGCTATCTTTTTCTT
GATGTTGTTGGTGTGTTTGATGCCATTTTTGGATGTTGGTGATTTCTTCTTGGTTAATTTGTATTTCATCATTCTCACAAT