« Back to Trifolium pratense search


Detailed information on CNT30171097


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-21

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30725689Trifolium pratenseLupinus angustifolius25.8412.8581.03116forward

Expression of CNT30171097

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SVIGIFKLLPRTLALMAVQRQSAASESAKP*

Sequence

>CNT30171097
TAGTGTGATAGGAATATTCAAGTTGTTACCAAGAACATTAGCCTTAATGGCAGTACAAAGGCAAAGTGCTGCTTCTGAATCAGCCAAACCTTGAAGTAAT
GCACAACACTTGCTTGAAACAGGAGTTCCAACAATAACATTATGTCCTAGAATATCAGCACAAACACCTAGCTTTAATGTGTCTCTAGGACATTTTTGTG
ATGTTGGAGGAGTAGGAGTTGGAGGACAAGCATTAGGTGATGGCGGTGGTGGGCTAGGCTTAGGTTTTGGTGGTGGAGGGCTAGGCTTAGGTTTAGGAGT
TGGGTTGCATGTACCACAAGCATGAGAAAATGTTGAATAAGCAAGAAGAGAAAACAATATGATTAGTGCACTGAGCTTGTTAGAAGCCATAGTCAATTAA
GGATGCAAAAATGAAAAGAATGTGACCATTTTTAAGGGGAGAATTGGAC