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Detailed information on CNT30171036


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-156

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-102

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30513318Trifolium pratenseJuglans regia43.7467.2285.4685forward
CNT30275114Trifolium pratenseChenopodium quinoa44.3299.1484.73694forward
CNT30630785Trifolium pratenseVigna unguiculata43.9380.6686.05688forward
CNT30201346Trifolium pratensePisum sativum44.3267.2586.6694forward
CNT30712768Trifolium pratenseGlycine max44.4470.8886.21696forward
CNT30635987Trifolium pratenseCapsicum annuum44.4443.0484.05696forward
CNT3087979Trifolium pratenseVigna radiata44.4473.9685.06696forward
CNT30540607Trifolium pratenseBrassica napus43.8746.5484.13687forward
CNT30238974Trifolium pratenseBrassica oleracea43.9360.8885.76688forward
CNT30312527Trifolium pratenseCamelina sativa43.8781.485.59687forward
CNT3079390Trifolium pratenseBrassica juncea44.3259.6284.15694forward
CNT30723701Trifolium pratenseLupinus angustifolius43.8139.0785.28686forward

Expression of CNT30171036

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MASPKHLLLMIVHIYMNSLIKGHKHPRSLLQTKSNHEIT*

>peptide 2 (40 aa)
MVSELSTSKVMVLPVKVLTKICIPPLKRSTRWRVDSFWIL*

>peptide 3 (51 aa)
MRRCWSGGIPSLSWILALTLSMVSELSTSRVMVFPVSVFTKICICRISKNN*

>peptide 4 (77 aa)
MKRGLLLNIVISKSPSVFQLLSGEDETLLVRRNSFLVLDLGFDVVDGVRALHLKGDGLSGECFHEDLHLQNQQEQLN*

>peptide 5 (31 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTR*

Sequence

>CNT30171036
CTTGTTGATGTTTTGAGAAACGTATGATTTGCATCTTAACTCAACAATGAACTAGGTTTTGTTTTATATCGAGCATATTGATTGATAAAATTTTCTGATA
CAAAGATGCAAAGTTTGGGAATAGCAGAAAAATGGCTTCACCAAAGCATCTATTGTTGATGATAGTTCACATTTACATGAATTCACTTATCAAAGGACAT
AAACATCCAAGATCACTTCTTCAAACAAAAAGCAATCACGAAATAACATAGCATAAAACTGTGAAATAAATTAAACACACTGATTACCATAAAGGGAAAG
TACTAAATTCATTATTCACAAAACCATAGAGTTCACAACAGACCAAATTTATTATAAAGGGCCATGATAGACCCTATTAACATCCAAAGTTGACAAATTC
ATTTCAAAACAACCAACAACACAGACAGAGTTCACAACCACAGCTTAAAAACCACCACGAAGACGGAGCACAAGGTGAAGGGTGGACTCCTTCTGAATGT
TGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGTTTCCCTGCGAAGATCAGCCTCTGCTGATCAGGTGGGATACCTTCCTTATCCTGAATTTTGGCCTT
CACATTATCAATGGTATCTGAGCTCTCCACCTCCAAGGTTATGGTCTTACCAGTCAAGGTCTTGACAAAAATCTGCATACCACCCCTCAAACGCAGCACA
AGGTGGAGGGTTGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGA
TTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGAT
CTGCATACCTCCACGCAGACGGAGAACAAGATGAAGCGTGGACTCCTTCTGAATATTGTAATCAGCAAGAGTCCTTCCGTCTTCCAACTGCTTTCCGGCG
AAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGG
TCTTTCCGGTGAGTGTTTTCACGAAGATTTGCATCTGCAGAATCAGCAAGAACAATTAAATTAGAATCAAACATCAGAACTTGAATTAAAACTTGACCTA
GAATCTACTAATCAGAATTTAACACCAAAAATCGAATTGAATCAAATATAACAGATCAAAACCAACGTTTAACAAACGTATCTGAAGAATTCGAAAAAAC
GCAAATAGTTTCGATCATATAAAGCGATAAATCAAACAGAATTTTATACAACAAATCAAAAACAGCGTTCAACAAACGGATCTAAAGAAATATAGACAGA
ATCCTTGTAGATTCGTTCATACAAAGCATGATCATGAACTCTACAAACAAAACCTAATCAAGGATTAAGAATTTCTAACACAAGCTATGAATCATATTAG
GTTCAGATCTGAGACAAATTCCAAAACAATTAACCGATACAAACCCTAACAAATCAATTTCTAACA