Detailed information on CNT30171019


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTPRT002428, E-value = 8e-177

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314958Trifolium pratenseCorylus avellana38.828.0882.58132forward
CNT30515782Trifolium pratenseJuglans regia40.2910.7681.75137forward
CNT30701990Trifolium pratenseQuercus lobata38.5322.4383.21131forward
CNT30501297Trifolium pratenseCoffea canephora33.2427.2382.3113forward
CNT30727197Trifolium pratenseCorchorus capsularis23.534.586.2580forward
CNT30629487Trifolium pratenseVigna unguiculata24.1214.9484.1582forward
CNT30109318Trifolium pratenseOryza longistaminata2026.2586.7668forward
CNT3024212Trifolium pratensePopulus trichocarpa39.4121.1481.34134forward

Expression of CNT30171019

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYFSSDPFSINSYIRARLEPSTQKPISCTTLTW*

>peptide 2 (33 aa)
AAVNDTILLSVGQSLTSPKSDTFGLKFSSRRML*

>peptide 3 (39 aa)
MSKCRIFILHPLCKYSMPLATPREIAYKFSQLKKLVSSV*

Sequence

>CNT30171019
TGCGGCGGTTAATGACACAATACTTTTATCTGTAGGACAAAGTCTCACTAGTCCAAAATCAGATACTTTTGGATTAAAGTTTTCATCAAGAAGGATGTTA
TGAGGCTTTATGTCAAAGTGTAGAATTTTCATATTGCATCCATTATGCAAATATTCAATGCCTCTAGCCACTCCTAGAGAAATAGCATACAAATTTTCAC
AACTCAAGAAATTAGTCTCTTCAGTATGAGAAAATATGTATTTTTCGAGTGACCCATTTAGCATAAATTCATATATAAGAGCACGTTTAGAACCCTCAAC
ACAAAAACCAATAAGTTGTACAACGTTAACGTGGTGAATC