Detailed information on CNT3017095


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 2e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273043Zea maysChenopodium quinoa40.198.5378.4213forward
CNT3068263Zea maysLeersia perrieri31.3221.8192.77166forward
CNT30371242Zea maysOryza glumipatula30.9425.0492.07164forward
CNT30150970Zea maysBrachypodium distachyon23.5851.8791.2125forward
CNT30578122Zea maysOryza barthii24.3416.3792.25129forward

Expression of CNT3017095

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MIPGTEGGIRRWRSLRVYAATCSGVALSLASAPGVTMDGFSRMPSNMTLFSAMA*

>peptide 2 (41 aa)
WLHGMGMDRSTCLTMISTHVSLGGAAVSRVMAGRLISSCSS*

>peptide 3 (36 aa)
MASWDGNGSEYVLNHDQYTRISRRGGGIPGDGRAIN*

Sequence

>CNT3017095
CATGGCTTCATGGGATGGGAATGGATCGGAGTACGTGCTTAACCATGATCAGTACACACGTATCTCTCGGAGGGGCGGCGGTATCCCGGGTGATGGCCGG
GCGATTAATTAGTAGCTGTAGTTCTTGACGAACATTCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGGGAGTTGG
CCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACCTTGTCCGGCTGGCCGCCCCAGGTCTTGAGGAACATGATCCCGGGCACGGAGGGGGGGAT
CCGGCGGTGGAGGAGCTTGAGGGTGTACGCGGCCACCTGCTCCGGGGTGGCCCTGTCCTTGGCCTCCGCGCCGGGCGTCACCATGGACGGCTTCAGCAGG
ATGCCCTCGAACATGACGTTGTTCTCCGCCATGGCGTAGAAGGTTTCGGCCCACACCTTCTGCGCCACCTCGAACGTGCGCTCGATGCCGTGCTCGCCGT
CCAGCAGGATCTCCGGCTCCACGATCGGCA