CANTATAdb - search

Detailed information on CNT30170564

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C5I3|ERF76_ARATH, E-value = 3e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30525755	Pistacia vera	Phaseolus vulgaris	7.75	20.03	85	140	forward
CNT30585986	Pistacia vera	Musa acuminata	7.75	20.62	80.71	140	forward
CNT30234912	Pistacia vera	Brassica oleracea	6.09	23.66	82.73	110	forward
CNT30572283	Pistacia vera	Vitis vinifera	7.7	29.45	84.89	139	forward
CNT3022992	Pistacia vera	Populus trichocarpa	9.75	28.07	83.52	176	forward

Expression of CNT30170564

Peptides detected in this lncRNA

>peptide 1 (62 aa)
METIILMMIESEPLILLILHSSNSIKIEHLIRRTENTSHGLKRKSNGGVKSTTTTTPSTTDI*

>peptide 2 (34 aa)
MHLFNVPAVIVGSVRFTVNRRLISGRHFVKCFSG*

>peptide 3 (43 aa)
MNIKEIVFMISDKHAIIWGKKNQAISSGGKLRSKPRILLGLTS*

>peptide 4 (43 aa)
CAVLLLINIILILINLCIKQESKGKVGGRPTLFLVPDILWFYI*

Sequence

>CNT30170564
AATGTGCAGTTTTATTGTTAATTAATATAATACTCATATTAATTAACTTATGCATAAAGCAAGAATCAAAAGGTAAGGTCGGCGGTCGGCCAACACTCTT
TTTGGTACCAGATATACTATGGTTCTATATATAATTATAATAATATCTGGTGGTTGTAGATTTGATTAACTCCAATTAATAGACATTTCTCCTAATTAAT
GCTTAGCTTAAAGATGATACAAATTTTGTCAACAGTCCTTTAAATTAACATTTCCACTGTTACCAATTCTAAGACCAACCGATATAAAGCCAACATTTAA
TGAAGCAACCCCCAAAACGTCCGAACACTGTTCTATAATGAAAACAAAATTAGAAAACTTAATGGTAAATTGATTTATTCATCGAATTCAAAACACACCT
ATAAAGTAGGTGGCAGGGCATGCCCTATTAGATTTCTTGTAAATGAAATGATGCTCTTGCAAAATCCAACGTACAAAATTAAACAAAAACAAAAACCAAT
CTACATGCTGTGACACGTGTCCACTTTTTACTGAACATAAATAGAATAATACTACACCCACGTGGCAGCAAGTATGATTATTTGAAAAAATTCACATTCA
AAAGTATCCGTACTGACACATATCGCACAACTACCGCACGGCCGGAATATCTATTTCCAATATTCCGGCGAAACACCATCGTTTAGCCATAAATAAATAA
TACAGGAATATATATGTGTTAATTTAATTCATTTGATTTTTCTTTTCTTTTCTTTAAAAAAAGAACCGAGTACAGAGTAACTAGTTACCAACAACAGTGA
AGAGACTCGATGGCTTCTCTGTTGCAAAAAAGGTGGAGATCAGCTACGTATTCACATCCGTGATCAAAATCACAACAGATCACCTGAAAAGCTGACCGTC
ATTTTTTTTTTTTTTTTCTAGCCTACTTTTCTTTTTTCTTCAAACGGGAAATAAAAAATAAAGTTTCCATGAAAAAATGAACATAAAAGAAATTGTTTTT
ATGATCTCCGATAAACACGCCATTATCTGGGGAAAAAAAAATCAGGCGATTTCTTCTGGAGGAAAATTAAGATCGAAACCGAGAATTCTCCTTGGCTTAA
CATCGTGATGGTTTAAATCAACGATGGATGATGAATCAGAGTCACTTTGGACACTTCCGTTCCCCGCCGCGGCAGCATGGAAACCATAATTCTGATGATG
ATCGAATCTGAGCCGCTGATACTGCTGATTCTTCATAGCAGCAATAGCATCAAAATAGAACACCTGATTCGCAGGACCGAAAACACCAGCCACGGGCTGA
AACGGAAATCTAACGGCGGCGTTAAATCCACCACTACCACCACCCCTTCCACCACCGATATTTAGATCCAAAGGCGAAGAATCAACCATCAGAGCCGGCT
CCCGGCTCGATGACTCCACTGTACTACTCTGACTCGGACTCTGATTATTACAAATTTTCTTTGTTACATTCTCACAAGGCAAGGGAAAGTTAGTTTTAGC
TTTAGCGCCGCGGAATTCTCGGGCGGCGGCATCGTAAGCTCGGGCAGCTTCTTCCGCGGTGTCAAAAGTACCAAGCCAAACACGGCTCTTCTTGCCGGGA
TCTCTAATCTCGGCGGCGTATCGGCCCCAGGGCCTCTTTCTCACTCCCCTAAAATGCACCTCTTTAACGTTCCCGCTGTTATTGTTGGTTCCGTAAGGTT
TACCGTTAACCGCCGTCTTATCTCTGGGCGCCATTTCGTTAAATGTTTCTCAGGTTAGTATAAGTGTTTTGGTTTCTGTGTTGAGAGAGAAGTAACAAGG
TGGGGA