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Detailed information on CNT30170457


BLAST search results

BLAST vs Swiss-Prot:
sp|P92559|M1280_ARATH, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3094383Pistacia veraSolanum tuberosum9.3755.3582.35119reverse complement
CNT30588877Pistacia veraMusa acuminata13.9464.8488.14177reverse complement
CNT30235780Pistacia veraBrassica oleracea29.5340.2881.6375reverse complement
CNT3017135Pistacia veraZea mays8.1922.0884.62104forward
CNT30608460Pistacia veraGossypium raimondii21.2697.8381.48270reverse complement
CNT30627951Pistacia veraDaucus carota14.1723.2985180forward
CNT30360854Pistacia veraLactuca sativa30.2472.3283.07384reverse complement
CNT30370833Pistacia veraOryza glumipatula8.3524.2687.74106forward
CNT3099983Pistacia veraOryza rufipogon8.3521.7287.74106forward
CNT30116375Pistacia veraOryza nivara6.9324.3189.7788reverse complement
CNT30550879Pistacia veraOryza brachyantha7.4823.6987.3795reverse complement

Expression of CNT30170457

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MCPRISLAVHWHCKYAVTNNQAKVIGIRPTTIPNRKTSIISI*

>peptide 2 (34 aa)
MFLQEISSQSSCKRYFFLTSRVLVLVLNKIASTK*

>peptide 3 (34 aa)
MNYSFSEFQISPILFRPINRVEVIVKTASRNRNN*

>peptide 4 (30 aa)
MIIRVSKVQTRWMFVIPTILLTPNPDKEKG*

Sequence

>CNT30170457
ATACGGCTCCTCCCTTATGTGCATAACGAGAGTAATACAAGAAATTAAAAAAGATTGAAATATTCTCCTTATGAACTGAGTGGGGCTAATGTTTTTACAA
GAAATCTCTAGCCAATCTTCTTGCAAAAGATATTTTTTCTTAACATCGCGCGTTTTGGTACTAGTACTAAATAAAATAGCTAGTACCAAATAAAATAGAA
ACTCCAACAATTTCTTTGTTCTCAACGCCCCTTTATTTCTAGGAATTAATCACTTCAACAATCTTCGATGATTATAAGGGTATCCAAAGTACAAACGAGA
TGGATGTTTGTTATCCCAACCATTCTTCTTACTCCCAATCCCGATAAGGAAAAGGGGTAATTTATAACAAAGTTTTCGTTCTGCGGAATAGATTAAGGCC
AACCCTTAAAGCAACTAGCAACTCTAACTGTCAAGACAAATTGAACGAGAAAGCACCATACACCTTACTCTTGGGTATGGAGCCAGCATAGGTCAAGTAT
AACATGTGTCCAAGAATAAGCCTTGCCGTTCATTGGCATTGTAAATATGCGGTTACGAATAATCAAGCCAAAGTAATAGGAATTAGACCTACGACGATTC
CAAATAGAAAAACTTCAATCATTTCAATTTAATTTCTTTGAAAGGGGGAAAAGAGAGGTAATATCTATCCCTAAATATTAATCCGTATTGTCTAGGAATC
TCAATGCCCAGTAATTGGTAATTAACACGGTAAGGAACTAAAGAATATCTAGAATACCACAGTAGGATTTCTTTTTATGAATTATTCATTCAGTGAATTT
CAAATAAGTCCTATCTTATTTAGACCAATAAATAGAGTCGAAGTTATAGTTAAAACCGCCAGTAGAAACCGAAATAACTAGTTGTAGTAGGCATGAAGGA
GCTAAAGGAAATATTTTCTTAAAGGGGGGCGAATTCGTTCTCGCGTCACAATACCCGATAGTGATGTGGCTACCCACTACCAAAATGAAGCAAATACTAA
AAACCAAAAAGAAAGCGGGATTCATTTTTGGTTTTTGAGTGATTGTATTTTTTTTATAGTGGAAATGCCATAAAGCACGAATCAAGATACATAATAAGAA
AACCAAAATCAAAATGAGGAAGAAAAAAATATCGTGATGTAAGTCTGTTATTCTTTGCATCATAGGTCTTCCCAATTTGACTACGTTTTGAAATGTCCCT
AGATATGGATGTACATCATACGGATCCATTGTAAGGAAGAAGAATTCCAGAATAATCATAAAAACTTTTC