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Detailed information on CNT3017045


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639555Zea maysNymphaea colorata56.9789.9394.61536reverse complement
CNT30536068Zea maysEucalyptus grandis63.7649.9192.151719forward
CNT30513456Zea maysJuglans regia61.5452.2793.431659reverse complement
CNT30269781Zea maysChenopodium quinoa60.5355.2392.281632reverse complement
CNT30630109Zea maysVigna unguiculata62.8353.7492.621694reverse complement
CNT30196858Zea maysPisum sativum57.6883.7492.031555reverse complement
CNT30503447Zea maysNicotiana attenuata42.3668.2694.481142forward
CNT30638683Zea maysCapsicum annuum18.9599.0391511forward
CNT3090144Zea maysSolanum tuberosum63.7643.8193.61719reverse complement
CNT30193801Zea maysSecale cereale52.3710098.651412reverse complement
CNT30538116Zea maysBrassica napus20.9946.796.64566reverse complement
CNT30655263Zea maysRosa chinensis57.7986.3291.011558reverse complement
CNT30154922Zea maysPrunus persica58.2392.9590.761570forward
CNT30319706Zea maysAsparagus officinalis59.7656.0595.161611reverse complement
CNT30103033Zea maysOryza rufipogon57.3499.6897.221546forward

Expression of CNT3017045

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKAERSPTDAF*

>peptide 2 (66 aa)
MGYILQRRSAWYEPRGEAMASPRGSYFSAAALGTRTSARGIFSTPSYPEKAGSPCVLKPITIFRLT*

>peptide 3 (78 aa)
MSRRLILQQARGQRSLSPPLLGSSARFHVLFHYPLGVLFTFPSRYYFTIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 4 (61 aa)
MAWVTYFSAVAPGMSLVEKQWLVHGAHTSALQRLVLGPRLEAFSLPLLTLKKQGHLVSLNL*

>peptide 5 (35 aa)
MHFGENQLALGSSGISPLTTTHPLILQHQSVRTSA*

>peptide 6 (64 aa)
MHHLCPCSRGHPSLSRGFAACQALVRFFALHRIKPHAPPLVRAPVNSFEFHSCERTPQVGYLTR*

>peptide 7 (43 aa)
MLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

>peptide 8 (51 aa)
MFQFARLSLACSWIQQAIQKVELFGNLRIYAYFQLPEAFRRLLRPSSSLGA*

>peptide 9 (91 aa)
MDRSPRFGSISSDNRPMKTRFRYGFGGFHSLNQATAYESPAHSSTGTRSEITFPSTAWELSTVSRSISLPTGGSFHLSLTVLLHYRSPRSI*

Sequence

>CNT3017045
TTTAACACCGGCGGTCTGTTCAGGGTTCCAAACTCATAGTGGCAACTAAACACGAGGGTTGCGCTCGTTGCGAGACTTAACCCAACACCTTACGACACGA
GCTGACGACAGCCATGCACCACCTGTGTCCGTGTTCCCGAGGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTCGCT
TTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGTGGGATACTTAA
CGCGTTAGCTACAGCACTGCACGGGTCGAGTCGCACAGCACCTAGTATCCATCGTTTACGGCTAGGACTACTGGGGTCTCTAATCCCATTTGCTCCCCTA
GCTTTCGTCTCTCAGTGCCAGTGTCGGCCCAGCAGAGTGCTTTCGCCGTTGGTGTTCTTTCCGATCTCAATGCATTTCACCGCTCCACCGGAAATTCCCT
CTGCCCCTACCGTACTCTAGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTAGGATTTGACGGCTTCCCTGTCATCAGTTCACCAACTTCCTTG
ACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCG
ACCCCCTTTTGCGAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCTCCCCTAGGTATTCTCTACC
TACCCACCTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTCTTCCTGGGAGTATGGCATGGGTTACATACTTCAGCGCCGTAG
CGCCTGGTATGAGCCTCGTGGAGAAGCAATGGCTAGTCCACGGGGCTCATACTTCAGCGCTGCAGCGCTTGGTACTCGGACCTCGGCTCGAGGCATTTTC
TCTACCCCTTCTTACCCTGAAAAAGCAGGGTCACCTTGTGTCCTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACA
AGGGGTAGTACAGGAATATTGACCTGTTGTCCATCGACTACTCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAA
ACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGTTTGCTTC
CCTCTAAGGCGGAACGCTCCCCTACCGATGCATTTTGACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCA
GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTAGGG
GCCTTAGCTGGTGATCCGGGTTGTTTCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATATC
TAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCGCGCAGCCCGCACCGAAACAGTGCTTTACCCCTAGATATCCAGTCAACTGCTGCGCCTCAATGCA
TTTTGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCTGCT
TAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATCGCCCTATGAAGACTCGCTTTCGCTACGGCT
TCGGTGGGTTCCATTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCACTGCTTG
GGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCCAGGAGTATT
TAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACT
TTAGCCATCTAGGGTGCGGCACTCAACCGCTTCGCCTAGCAGCACAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATT
TCGCTCGCCGCTACTACGGGAATCACTTTTGCTTTCTTTTGCTCTGGCTACTAAGATGTTTCAGTTCGCCAGGTTGTCTCTTGCGTGCTCATGGATTCAG
CAGGCAATTCAAAAGGTTGAGCTATTTGGGAATCTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTC
TGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGAACCTCGCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATCTTA
TCAACGTCCATGAATGCGAAATCATAGATCGAACTGACGAATTGGCAACCTTCGGTGCTATCATAGTATCCGCTAAGTTCACGGGCTAGAGATAAG