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Detailed information on CNT30170299


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LHJ8|SAP5_ARATH, E-value = 5e-53

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533125Pistacia veraEucalyptus grandis8.2924.8184.5129forward
CNT3089988Pistacia veraSolanum tuberosum11.333.481.25176forward

Expression of CNT30170299

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MTIRISMFSTEQFSTSTSKSGQTDLPSTAGAPVHHSFLNNIAFLPI*

>peptide 2 (33 aa)
MLLVAGLPVKPQLLIQRVKVSGTLKSVSSFSVF*

Sequence

>CNT30170299
CCCGACAGGTGGTTTAATTAATTATAATACCATAACACGTGGCTATTTTGTGTTATTCGAACATAAAATTTCTAAATAAAAAGCACTTTTATATAAAATG
AAAACACAAGGCTTCCTCTAATTGGTATGTAAATCCCAGACCTCTTTTGAAGCCATTGAAAGGCCAGGCCACACCCACCTCCCCCCTTCCTTTCCCATCA
ATTACTTGGTATTTCTATTTAACAGCTTGCCTTCGAATCACAGCCGTTGGATCATTTTTAAGATCTCCACTATAATTTTTTTTTTATTTTGTTTTAAACA
AGAACGCAACTAATTACGCAATTGTTCCCGTCACACCCAACTCAGCTTTACATAGCTTTTCCCCTGACAACTTTGTGCCGCCCTTACGTGGCTACACCCT
ATTGGACGATGATAATATCGCAAATCATGTCAAACTCCAAACCATATCGCGACATTTTGTCCACTAGCTCGAGATAAAATTAACATCACGTTTCACATGT
CACTTTCATCTGGGTCCCACACCTTTGTAAAACCTTCCAACTGAATTTTCCAGTTTCATTGATAGGCCCAAAAAGACGATAAAACCCATAAAAGTTTCTT
AAATTTACATTCACATGCCACAAGCTTCAAGCTCCATTTATGATTTCTAAACAAAACAAATAACCTAATAATTATAATTATAATTAAAAATCTAAACACA
AACTCAAATATCTTAAACCACAATAATTTCATTTCTCAATAAACCAACTCTAATAAAATTAAAAAAAAAAGAAAGCAAATTATAGATTCATCATCATCAA
AGGAGAAACAAATCTTTTCAAGAATTTGTTCTTTCTCTCTCTCTATAACTCTTTTCCGATCACCATATATCTGAGAAAGAGATCCGGCGAGATCGAGTCT
GTCTCGGGTTTTTGATGTGGATAATTTCTTGTTTGTTTTTGAAACTCAAACTCTAACAATCTTGGCAGCTTTTACGACGGGATTTTCTCTCGCGATCGCG
TCACGACCTGCTGATTTATAATCGTAACTGCAATCATGACGATCCGAATATCGATGTTCTCCACAGAACAATTCTCCACATCGACATCTAAATCCGGTCA
AACCGACCTTCCGTCTACAGCCGGAGCACCGGTTCACCACTCTTTTCTCAACAACATCGCCTTTTTGCCGATCTGACTCTGGATTTTGGCTTGTTGTGCC
TGAAGCATCTGAGGACCGGTCGATCAACCGAGATCTGAAAGTTTTATCGCTGGCAAACTTTAAGATAGCGCCACCTGCGCTCGTGCTAGAAGCCGTGGTG
GTTGCTGCTGTTGTTGTGGAGGCCGTGGTGGCGTTGAAACATTTCTGGCACATGTTGTTGGTGGCTGGATTGCCTGTGAAACCACAATTGTTGATACAAA
GGGTCAAAGTTTCAGGGACCTTGAAATCTGTCTCTTCCTTTTCTGTCTTCTGAGCCATGTTGTGAATCAGAGAGAGAGAGAGAAATGAAAAATCACAGAG
AATTATTGAGTTTTTAGAGAGAGAGAGAGGCTTCAAAGGTTTGGTGTTAGGGAGAGG