« Back to Pistacia vera search


Detailed information on CNT30169892


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 1e-153

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-82

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30201346Pistacia veraPisum sativum45.4265.3185.46674forward

Expression of CNT30169892

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVLPVRVLTKICMPPRRRRTRWSVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPRRRRTRWRVDSFWML*

Sequence

>CNT30169892
CTCTGCAATGATTTTCCTCATCTAAATATGCGAAAGCCATAAATACTGTTAGGCACCGTACTCTTAATCAAACGAAGCCCACATTTTGAATCATATATAA
ACCACGAAAGCATTGCGAAAACCAACATTTAAAAGAAGAGAATGTTGGGCAGGTGGACTTGATGAAAACACAAAACATCCGGCTTCAAGATCCGATGGGA
GGAAGCACATTTTTATAGATAGAATCACGACAAAGCCCTTGCTGCCTAGGAAGCACTGCACACTTGACTTGACAGCAATCAGAGAACCAAATAGAATTAC
ACTCAGCGCAGATGAACTATACCTTCATACGTCCCCCACAAAGAATACAGTAGAGCTACCCAACAGATAGAAGGGTTTTCTTCATCTTCCGTATTCAAAT
CAATACACTTCAACTTCACTTATAATATCAAGTTATCAACCAACACAAGATTAAAACACTTTTTAACTGAACCGTTCAACCGAGAAACTATTATTATTAT
TCCAAAGCAAAGAAAAACACAAGACAAAGACAGCTATTAAATAACGGAAACGAAACTGAAACTGGTCTCAACTTCATGACCAGGAAATACTGGTAAACTC
CAGACAGACACACAGACAGACAGGCAGAGAAACCACACCACCACCATCCAATTTTCACTTAGAATTCACCACCACGAAGACGGAGGACAAGGTGGAGGGT
AGACTCCTTCTGAATGTTATAATCAGCCAGGGTACGACCGTCCTCCAATTGCTTCCCAGCAAAGATCAAACGCTGCTGATCCGGTGGAATTCCCTCCTTA
TCTTGGATCTTTGCCTTCACATTGTCTATGGTGTCAGAACTTTCCACTTCAAGGGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCATACCAC
CACGGAGACGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCGTCCGTCTTCTAATTGCTTGCCGGCGAAGATCAAACG
CTGCTGGTCCGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTACCGGTG
AGAGTCTTGACAAAGATCTGCATGCCTCCACGGAGACGGAGGACAAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGGCCGTCCT
CAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATTGTATCGGAACTCTC
GACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATGTTGAGAAGATTGTTGTTGAAACTTGAAATAGAGAAATAGAGGATTGCT
AGAATAGAATTGTGAAGAAGAAAGGGGGAGGAAGGGTGTTTATATAAGAGAAAATGCCGACTTGGTGAAGGTTTCGAAGAGAAC