« Back to Pistacia vera search


Detailed information on CNT30169886


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONMEST001181, E-value = 5e-108

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30217449Pistacia veraKalanchoe fedtschenkoi66.0775.4883.491139forward
CNT30624049Pistacia veraDaucus carota66.0755.2982.441139forward
CNT30477817Pistacia veraArabidopsis halleri58.6494.4981.91011forward
CNT30355498Pistacia veraLactuca sativa66.2468.8882.571142forward
CNT30334103Pistacia veraCynara cardunculus66.0756.5383.931139forward

Expression of CNT30169886

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVIVFPVRVLTKICIPPRRRRTRWRVDSFWML*

>peptide 2 (40 aa)
MVSELSTSRVMVLPVRVLTKICMPPRRRRTRWRVDSFWML*

>peptide 3 (60 aa)
MESRLLLNVIVGQGTTVLQLLPSKDQTLLIRWNSLLILDLCLHIVYGVRTFHFKGDRLPS*

>peptide 4 (57 aa)
GRKHIFIDRITTKPLLPRKHCTLDLTAIREPNRITLSADELYLHTSPTKNTVELPNR*

Sequence

>CNT30169886
GGGAGGAAGCACATTTTTATAGATAGAATCACGACAAAGCCCTTGCTGCCTAGGAAGCACTGCACACTTGACTTGACAGCAATCAGAGAACCAAATAGAA
TTACACTCAGCGCAGATGAACTATACCTTCATACGTCCCCCACAAAGAATACAGTAGAGCTACCCAACAGATAGAAGGGTTTTCTTCATCTTCCGTATTC
AAATCAATACACTTCAACTTCACTTATAATATCAAGTTATCAACCAACACAAGATTAAAACACTTTTTAACTGAACCGTTCAACCGAGAAACTATTATTA
TTATTCCAAAGCAAAGAAAAACACAAGACAAAGACAGCTATTAAATAACGGAAACGAAACTGAAACTGGTCTCAACTTCATGACCAGGAAATACTGGTAA
ACTCCAGACAGACACACAGACAGACAGGCAGAGAAACCACACCACCACCATCCAATTTTCACTTAGAATTCACCACCACGAAGACGGAGGACAAGGTGGA
GGGTAGACTCCTTCTGAATGTTATAATCAGCCAGGGTACGCCCATCCTCCAGCTGCTTCCCAGCGAAGATAAGCCTCTGCTGATCAGGTGGAATCCCCTC
CTTGTCCTGAATCTTAGCCTTGACATTATCGATCGTATCAGAACTCTCCACCTCCAGAGTTATCGTCTTCCCCGTAAGGGTCTTGACGAAAATCTGCATA
CCTCCACGAAGCCTCAGCACCAGATGGAGAGTCGACTCCTTTTGAATGTTATAGTCGGCCAAGGTACGACCGTCCTCCAATTGCTTCCCAGCAAAGATCA
AACGCTGCTGATCCGGTGGAATTCCCTCCTTATCTTGGATCTTTGCCTTCACATTGTCTATGGTGTCAGAACTTTCCACTTCAAGGGTGATCGTCTTCCC
AGTTAGGGTTTTGACGAAGATCTGCATACCACCACGGAGACGAAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCCAAGGTTCGTCCG
TCTTCTAATTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGTGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGGAGC
TCTCCACCTCGAGAGTGATGGTCTTACCGGTGAGAGTCTTGACAAAGATCTGCATGCCTCCACGGAGACGGAGGACAAGGTGGAGAGTTGACTCCTTCTG
GATGTTGTAATCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCCGGGGGGATCCCCTCCTTGTCCTGGATCTTG
GCCTTGACATTATCGATCGTGTCAGAACTCTCGACCTCAAGAGTGATAGTCTTGCCGGTGAGAGTCTTAACGAAGATCTGCATGCCTCCACGGAGACGGA
GGACAAGATGGAGTGTTGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATGAGACGTTGCTGGTCCGG
TGGGATCCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTATCGATTGTATCGGAACTCTCGACCTCGAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACG
AAGATCTGCATGTTGAGAAGATTGTTGTTGAAACTTGAAATAGAGAAATAGAGGATTGCTAGAATAGAATTGTGAAGAAGAAAGGGGGAGGAAGGGTGTT
TATATAAGAGAAAATGCCGACTTG