Detailed information on CNT30168718


BLAST search results

BLAST vs Swiss-Prot:
sp|P50564|H33_CHLRE, E-value = 1e-12

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698329Pistacia veraQuercus lobata6.6721.6185.29102forward
CNT3069241Pistacia veraQuercus suber6.6723.1884.31102forward
CNT30709007Pistacia veraGlycine max6.3440.7683.5197forward
CNT30477972Pistacia veraArabidopsis halleri5.8225.7283.1589forward

Expression of CNT30168718

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MLLWYFLISLKAIVPGLKRCGFFTPPVAEANG*

>peptide 2 (33 aa)
SGTGTSLIGMGPKLVDLNRSKILDPYPTLWRYR*

>peptide 3 (45 aa)
MEVQVDPWVPTLFILVSNSCNYTPTVYAILIFYSYTPIIIYSKFN*

>peptide 4 (29 aa)
MPKKYGQTYVRCMTSLIWPRYSPYNNHSPK

>peptide 5 (47 aa)
MGAHTLHSSFQFLQLHPHSLCHFNILQLHPHNHLLQIQLISLLFVLG*

>peptide 6 (51 aa)
MIKAAQFFDKKQYKANNPFSNKATQINPTKKPIFQTKSIDPFVKPSLEPSN*

>peptide 7 (41 aa)
MRVELIFFRIRIYLFKDFKSFFFSNNKQGPIGTCRFTRITR*

Sequence

>CNT30168718
GTCGGGTACGGGTACGAGTCTTATAGGTATGGGCCCAAAACTGGTCGATCTAAATAGGTCCAAAATATTGGACCCATACCCTACCCTATGGAGGTACAGG
TAGACCCATGGGTGCCCACACTCTTCATTCTAGTTTCCAATTCTTGCAATTACACCCCCACAGTTTATGCCATTTTAATATTTTACAGTTACACCCCCAT
AATCATCTACTCCAAATTCAATTAATTTCACTTCTTTTCGTTCTTGGTTGAAAACAAAAAGTTTCTCTCGTTCACTTTTCATCTTCCAAGTATGAATAAA
GTAAACCCAAACTCAGTAAAACTAAATTTCTCACATTTAAATGAATTCAAATCAACATGATTAAAGCAGCCCAATTTTTCGACAAAAAACAATACAAAGC
AAACAACCCATTTTCAAATAAAGCAACACAAATTAATCCTACAAAAAAACCCATTTTTCAGACCAAATCAATAGATCCATTCGTCAAACCATCCCTCGAG
CCTAGCAACTAAGTAATCAAAAGGAGAAGAAAAAGATCCTTAGATTGCAGCAAAAACAAACAGCACACAGACCCTATAAATGGCCAGCATAAACCAACAT
ATGCATAGCTAGACAACTCCATTGCCCACAAAAACCTACTCAACAAAAATCTACACAACCTAACAAGGACCCAAAGAGGCAATTTCTGCTGCTATCCTTT
TTATCCAGCATAACAAAAACCTGCAAACCCAATCAAAAGCTCTATGCTCTTATGGTACTTTCTGATCTCTCTCAAAGCCATAGTTCCCGGCCTGAAACGA
TGTGGCTTCTTCACTCCTCCCGTCGCCGAAGCTAATGGCTAGTTGCTTATATGGCGACTTGCCTTCAATAGACTTCCTTGCTGTTCATTTCGTGTAAGCC
ATTTGAAAGGTAGATGATTGAAAGAGTGGTTTTCTATTTGGACTAAGACTAGAGAAGTGCTAAAGCGGCGACGGTGGAGAAGTTGGAGTTGAGTTTGTAA
GGTGGAGATGGAGAAGTGTTGAAGCAGCGACGGTGAGATAGAGGAGATGGCGATGGTGAGAGAGTTGCTTTGCGTCTGTACTGGGTGAGAACTGGGATGA
GAGTTGAACTAATATTTTTTAGGATTAGGATTTACTTATTTAAGGATTTCAAATCCTTTTTTTTTTCAAATAATAAACAGGGACCTATAGGCACCTGCAG
GTTTACCCGTATAACTCGTTGACAATACAGCTGGGCCAGGTCGGGCCGGGCTGGGTCGGGTATAGGTCTAGAAAAAATAGGTCCAATGCATTAGACTCGT
ACCTTATATTTTTTACCCAAGTACAGGTCGACCCGTGGGTCTGGACCCGTTTTGCTAGGTTTAACTGCAACACACTCGTCCGATGATGGATTAGCAACTC
CCTGACCCAAGAGATTGTCGTCAGACTACACACAAAAAAATGCCCAAGAAATATGGGCAAACATACGTGAGATGTATGACTAGCTTGATTTGGCCAAGAT
ATTCACCTTACAACAATCACTCGCCAAAAT