Detailed information on CNT30168584


BLAST search results

BLAST vs Swiss-Prot:
sp|P07145|CATA_IPOBA, E-value = 9e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Pistacia veraJuglans regia79.3445.9484.65215forward
CNT30501026Pistacia veraCoffea canephora30.635.4487.9583forward
CNT30282683Pistacia veraChenopodium quinoa28.418.3688.3177forward
CNT3021611Pistacia veraCitrullus lanatus28.4119.489.6177forward
CNT3070085Pistacia veraQuercus suber29.5212.2793.7580forward
CNT30381388Pistacia veraManihot esculenta25.0911.6688.2468forward
CNT30405510Pistacia veraBeta vulgaris29.5217.0288.7580forward
CNT30526368Pistacia veraPhaseolus vulgaris73.4312.581.91199forward
CNT30709296Pistacia veraGlycine max30.2620.385.3782forward
CNT3046375Pistacia veraPrunus dulcis52.420.3487.32142forward
CNT30638211Pistacia veraCapsicum annuum28.7813.9888.4678forward
CNT3098188Pistacia veraSolanum tuberosum23.2512.788.8963forward
CNT30305192Pistacia veraTriticum aestivum32.4716.2485.2388forward
CNT3085325Pistacia veraVigna radiata78.2329.9981.13212forward
CNT30668803Pistacia veraTriticum dicoccoides38.7513.6584.76105forward
CNT30475173Pistacia veraSaccharum spontaneum78.628.6780.75213forward
CNT30654455Pistacia veraRosa chinensis54.6132.3985.14148forward
CNT30714909Pistacia veraMalus domestica golden30.6315.7589.1683forward
CNT30624536Pistacia veraDaucus carota26.25.0588.7371forward
CNT30370393Pistacia veraOryza glumipatula35.0640.4383.1695forward
CNT30154232Pistacia veraPrunus persica30.6317.9792.7783forward
CNT30574555Pistacia veraVitis vinifera28.419.3187.0177forward
CNT30704830Pistacia veraPrunus avium30.6340.6990.3683forward
CNT3022569Pistacia veraPopulus trichocarpa24.357.6186.3666forward
CNT30576697Pistacia veraOryza barthii35.4222.1283.3396forward
CNT3050211Pistacia veraCucumis sativus77.4955.8580.48210forward

Expression of CNT30168584

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CKELSMFLFRTKRPTGCRGMIVLWPPFGNIKRVKV*

Sequence

>CNT30168584
TCTGTAAAGAATTGTCAATGTTCTTGTTCAGGACCAAGCGGCCAACGGGCTGCAGGGGGATGATTGTCCTCTGGCCACCATTTGGTAACATCAAGAGGGT
CAAAGTCTAATTGGTCCTCATGTGCGGGATCAATAGTTTGATGTAAGTTTCCACTCAGGAAAGTTTCCAGCTGCAATTGAATCATAGAGATCCTTGGTAG
CATGGCTGTGGTTAGTTCCTCCAACCTGGACTGCCTCTTTCATCAGTCAAACACTTGACTCCACAAGTGGG