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Detailed information on CNT30168132


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMTRT001211, E-value = 3e-38

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522713Pistacia veraSetaria italica28.2231.2783.62116forward
CNT30534291Pistacia veraEucalyptus grandis37.7124.3380.65155forward
CNT30516889Pistacia veraJuglans regia48.6633.0683200forward
CNT30378644Pistacia veraArabidopsis thaliana47.4568.983.59195forward
CNT30617295Pistacia veraSesamum indicum42.8242.9382.39176forward
CNT30728061Pistacia veraCorchorus capsularis58.1525.1183.26239forward
CNT30381383Pistacia veraManihot esculenta51.0911.9582.38210forward
CNT30196749Pistacia veraPisum sativum50.1251.1283.98206forward
CNT30562824Pistacia veraActinidia chinensis37.9628.0685.26156forward
CNT30542792Pistacia veraBrassica napus22.3821.285.8792forward
CNT30511058Pistacia veraSolanum lycopersicum13.6323.4387.556forward
CNT30253208Pistacia veraAvena sativa33.3311.483.94137forward
CNT30313575Pistacia veraCamelina sativa53.7794.8584.16221forward
CNT3062349Pistacia veraArabidopsis lyrata57.6627.2183.97237forward
CNT30614348Pistacia veraArabis alpina27.0110.5283.78111forward
CNT3015820Pistacia veraZea mays33.8230.4284.89139forward
CNT30203517Pistacia veraHelianthus annuus37.2313.6183.01153forward
CNT30681999Pistacia veraTriticum urartu36.9847.882.89152forward
CNT30721780Pistacia veraTriticum spelta24.5744.6987.13101forward
CNT30341625Pistacia veraEragrostis tef31.8713.4481.68131forward
CNT30621035Pistacia veraCajanus cajan40.6324.4285.03167forward
CNT30422340Pistacia veraPapaver somniferum37.7118.383.23155forward
CNT30706519Pistacia veraPrunus avium37.9618.8283.33156forward
CNT3057379Pistacia veraAmborella trichopoda26.0338.3582.24107forward
CNT3024644Pistacia veraPopulus trichocarpa42.828.6185.23176forward
CNT30321935Pistacia veraAsparagus officinalis58.1511.2684.52239forward
CNT30332119Pistacia veraDioscorea rotundata30.4119.6983.2125forward
CNT30575061Pistacia veraOryza barthii28.9513.0984.03119forward
CNT30117026Pistacia veraOryza nivara28.9517.7183.19119forward
CNT30333708Pistacia veraCynara cardunculus27.0113.785.59111forward

Expression of CNT30168132

Peptides detected in this lncRNA

>peptide 1 (36 aa)
YCCDPRDVSGANPTMKKCRRGNGIRLTASLRRSELS*

>peptide 2 (43 aa)
MQAGEWNKINCKLAEIRVELTREAKAASHSTHGGRNKVLKQIS*

Sequence

>CNT30168132
GTATTGCTGTGATCCACGAGATGTAAGTGGAGCAAACCCCACCATGAAGAAATGCAGGCGGGGGAATGGAATAAGATTAACTGCAAGCTTGCGGAGATCA
GAGTTGAGTTGACCCGGGAAGCGAAGGCAGCAAGTCACTCCACTCATGGTGGCAGAAATAAGGTTCTGAAGCAAATATCATAGAGAGCTTCATTGTCCAA
AACCATACACTCATCTGCATTTTCAACCAGCTGGTGAACAGAAAGTGTGGCATTGTAAGGTTCGACAACAGTATCAGACACCTTTGGAGATGGAAACACG
GAGAAAGTAAGCATCATCCTATCTGGATACTCTTCTCTGATCTTTGAAATCAAAAGTGTTCCCATACCAGAACCAGTACCACCTCCCAAAGAGTGGCATA
CTTGGAAACCT