CANTATAdb - search

Detailed information on CNT30167187

BLAST search results

BLAST vs Swiss-Prot:
sp|Q39613|CYPH_CATRO, E-value = 3e-95

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30507180	Pistacia vera	Nicotiana attenuata	41.32	41.45	81.14	281	forward
CNT30638631	Pistacia vera	Capsicum annuum	42.65	38.46	78.62	290	forward
CNT30624974	Pistacia vera	Daucus carota	57.21	53.43	84.32	389	forward
CNT30155236	Pistacia vera	Prunus persica	68.68	52.59	83.3	467	forward
CNT3035490	Pistacia vera	Cucumis melo	59.85	82.72	81.33	407	forward

Expression of CNT30167187

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVMSKNTLGLAMLQTNKETQKKLIRFVQCCF

>peptide 2 (39 aa)
LRNTHEKLETPTSYFKHTQSVMIDYNMIMIIIIIEIYDL*

Sequence

>CNT30167187
CTAAGAAATACACATGAGAAACTAGAGACACCCACATCATATTTTAAACATACTCAGTCCGTCATGATCGACTATAACATGATCATGATCATTATCATTA
TCGAAATCTACGATTTATAACATTTTTTTTAAATCTAAGACAATTGACCGCAGTCAGCAACCACAACGGGCTTCGAAGTCCTGCCGGAGCTGGACCCCAC
TTTCTCAATGGCCTTCACGACGTCCAGACCCTCAACCACCTGACCAAACACCACGTGCTTTCCGTCGAGCCACTCGGTCTTAGCGGTACAGACAAAGAAC
TGAGACCCGATACCGGGTCCTGTGTGCTTCTTGACGAAGTTCTCGTCGGCGAACTTGGCGCCGTAGATTGATTCACCTCCTGTGCCGTTTCCGGCAGTGA
AGTCGCCTCCCTGGCACATGAAGCCGGGGATCACGCGATGGAAGCTTGATCCTTTGTAGTGGAGTGGCTTGCCGGAGCGACCGACGCCTTTCTCGCCAGT
GCAGAGAGCTCGGAAGTTCTCGGCGGTGCGAGGAGTGGTGTCCTGGAAGAGCTCCATCACGATCCTTCCGGCCGGCTGACCGCCGATGGTCATGTCAAAA
AACACCTTAGGGTTAGCCATGTTACAAACCAACAAAGAGACACAGAAAAAATTGATTAGATTTGTGCAGTGTTGTTTCGA