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Detailed information on CNT3016633


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697843Zea maysOryza sativa64.4239.2997.561231forward
CNT30678576Zea maysSetaria viridis19.0571.9493.96364forward
CNT30524653Zea maysSetaria italica28.6245.6698.35547reverse complement
CNT30548882Zea maysIpomoea triloba56.9341.2795.51088reverse complement
CNT30632593Zea maysVigna unguiculata57.4665.0594.351098reverse complement
CNT30504983Zea maysNicotiana attenuata19.9420.9299.21381reverse complement
CNT30304298Zea maysTriticum aestivum99.5871.9296.271903forward
CNT30221494Zea maysHordeum vulgare41.9764.5798.5802reverse complement
CNT30400948Zea maysTriticum turgidum99.5876.1296.481903forward
CNT30585815Zea maysMusa acuminata52.7541.5394.541008reverse complement
CNT30234810Zea maysBrassica oleracea29.5174.594.15564forward
CNT30147394Zea maysMedicago truncatula52.8550.796.831010reverse complement
CNT30440683Zea maysAegilops tauschii51.81102.4895.76990reverse complement
CNT30248040Zea maysAvena sativa40.8257.9597.82780forward
CNT30662061Zea maysTriticum dicoccoides98.998.4996.461890forward
CNT3081478Zea maysBrassica juncea39.6165.3792.87757reverse complement
CNT30143344Zea maysLolium perenne101.4786.6896.491939forward
CNT30229838Zea maysAnanas comosus23.1810098.42443forward
CNT30218527Zea maysKalanchoe fedtschenkoi39.9351.2497.25763forward
CNT30655299Zea maysRosa chinensis56.7238.295.571084reverse complement
CNT30203595Zea maysHelianthus annuus57.5159.9993.811099reverse complement
CNT30689128Zea maysTriticum urartu70.7572.7395.931352reverse complement
CNT30721611Zea maysTriticum spelta11.7248.5999.55224forward
CNT30369805Zea maysOryza glumipatula51.0768.0696976reverse complement
CNT30154718Zea maysPrunus persica24.868.493.67474reverse complement
CNT3037914Zea maysCucumis melo21.6619.4589.61414reverse complement
CNT30575706Zea maysOryza barthii50.9239.9395.99973reverse complement
CNT30582488Zea maysEchinochloa crusgalli64.1100.9197.881225reverse complement
CNT30116696Zea maysOryza nivara64.4231.0597.641231forward

Expression of CNT3016633

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MLSHPSVGRDPESCLRFWRSFVDLRISPLHTKFHSPLSHSSELVSRAFRHFLATFTFNPIHRLRALYAQSFRRTLAPPVLPRLLARS*

>peptide 2 (31 aa)
MVKFLRKAQLRAGTQSSSSAGTSLGSSAISP*

>peptide 3 (31 aa)
MFPSCREQSELRQSFRIRSALQPCFPLSLPL*

>peptide 4 (37 aa)
MGDHWSDASGETNSQGVTGGVYRARVHIHRGMLIRDY*

>peptide 5 (32 aa)
NKTTKGLCGTSGTQKSWVIIGPMLRAKPIPRV*

>peptide 6 (50 aa)
MIAHSTKELYKRHCPSSLTRYCWIGLSPIVQDSPLLPPVGVRAVSQSQCG*

>peptide 7 (39 aa)
MLHRLCRPPSIPLSFGLATVLPRRSVSHVSWAPDPRSVA*

Sequence

>CNT3016633
CAATAAGACCACCAAAGGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCATTGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGA
CGGGCGGTGTGTACAGGGCCCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTTCTACTTCATGTTCCCGAGTTGCAGAGAACAAT
CCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCA
TGCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCACTGGCAGTCCCTCGTGAGTGCGGCACGCACCTTTTTCTTTGTTTTGGAGCGGGGCGCGTA
CTATTACCACTACGTACCACACCACCGGGCGGCTGGCCTTCATGCCGAGTCTTCCTCCGCCGCCAACTCGACGTCGTCGTAACCAAGCCTAACCAAACCT
CCATGCTCACTGGTACTTTGACGTCACTATAGGTAGGTCTCCGTGGGTCTTGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAGGCTC
CCAATGGTGAAATTCTTGCGGAAAGCACAGCTACGTGCTGGCACTCAATCAAGTAGTAGCGCTGGCACGTCACTCGGCTCCTCGGCTATTTCTCCTTAGG
CGCATGTCTCAGCAACACAAAACGAGGGTTTCGCTCGTTATAGGACTTGACCAAACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGA
AAGTAAGTACCATCCCGTTAAAGACAGGTTTTGTTGTTCATATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTATCGAATTAAACCACATGCTCCACCGC
TTGTGCAGGCCCCCGTCAATTCCTTTGAGTTTCGGTCTTGCGACCGTACTCCCCAGGCGGAGTGTTTCACACGTTAGCTGGGCCCCTGATCCGCGTAGCG
TAGCGTAGACAGACCAAGGGCGAACACTCATCGTTTACGGCATGGACTACCAGGGTATCTAATCCTGTTCGCTCCCCATGCTTTCGCACCCCAGCGTCGG
TAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGTTCCTTCGTAGATCTACGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCACTCAAGT
GAATTGGTTTCGAGAGCATTCCGCCACTTTTTGGCGACTTTCACTTTCAACCCGATTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACAC
TTGCCCCCCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTCGAGTCCTGTCATGATCGCGCACTCGACGAAAGAGCTTTACAAG
CGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGT
CTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACTACCTAATACTACGCAGGCTCATC
AAACAGCGCTTTTGAGCTTTCTTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGTTCGCCACTTTGTTCTCAACTATTCCGA
TTCCAGCAAACGGAGGCCGTTAGGTCAAAGCCGTTGCGCGCGCCCTGCAGGCAGGGCGAGACAACTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTC
CCCGAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTTTGACTATGATTGGGCCGAACAGT
GGTAGAACCTG