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Detailed information on CNT30165626


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520471Pistacia veraSetaria italica36.1929.4485.5131forward
CNT30192339Pistacia veraSecale cereale35.0816.2281.1127forward
CNT30286315Pistacia veraTriticum aestivum35.3615.0882.81128forward
CNT30225789Pistacia veraHordeum vulgare19.3433.0287.1470forward
CNT30396188Pistacia veraTriticum turgidum19.3424.4888.5770forward
CNT30555775Pistacia veraOryza glaberrima32.618.5886.44118forward
CNT30436659Pistacia veraAegilops tauschii30.9419.0584.82112forward
CNT30247414Pistacia veraAvena sativa35.3615.0481.25128forward
CNT30666638Pistacia veraTriticum dicoccoides19.3427.139070forward
CNT30454026Pistacia veraSaccharum spontaneum42.2716.6183.01153forward
CNT30134871Pistacia veraLolium perenne35.3619.5481.25128forward
CNT30624183Pistacia veraDaucus carota23.7636.7590.786forward
CNT30680268Pistacia veraTriticum urartu22.6518.8991.4682forward
CNT30720750Pistacia veraTriticum spelta36.1922.282.44131forward
CNT30351418Pistacia veraEragrostis tef41.7126.6385.43151forward
CNT30118009Pistacia veraOryza nivara22.9328.3387.9583forward

Expression of CNT30165626

Peptides detected in this lncRNA

>peptide 1 (45 aa)
LGSEVFKDGGEVNRGTGADTLGVLASLEEPSNTTDGKLETGLATP*

Sequence

>CNT30165626
CCTCGGCAGCGAGGTATTCAAGGACGGCGGCGAGGTAAACAGGGGCACCGGCGCCGACACGCTCGGCGTACTTGCCAGCCTTGAGGAACCGAGCAATACG
ACCGACGGGAAACTGGAGACCGGCCTTGCTACTCCTTGACGTGGCCTTCTTGGACGCCCCGGATCCGAGAGTTTTGCCCCGACCAGCCATCTCAACAGAA
GAAACTCTTTTAACGAACGAAAAGAATTTTTAAAATAGAAAGAGAGAGAGGTATGAAGTGTTAACGTGTGTTTTAATGTGCAAACGAATTGGGGCTAAGG
GTATATATAGAGAGATGGAGGGGTTGAGAGCTGACAAATGAGAGAGAAGTACGCGGATCGAG