Detailed information on CNT30165236


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3060687Pistacia veraArabidopsis lyrata5.482092.3178forward

Expression of CNT30165236

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNMKFCLLIYQVFLYLHISHTKTATELFCNKDKRVYL*

>peptide 2 (33 aa)
MFQVLYKALIKSTYYNEYEVLFIDIPSIFVPAY*

>peptide 3 (31 aa)
MMFKKQDTPSPPHPCPHSLHSLHFLFTSLFVL

>peptide 4 (29 aa)
MAASGSKLSNQVSSCLCFSVTLWFMLSRM*

>peptide 5 (51 aa)
MDLLTIASWEPGILQPVIYPLTPDFLSYHTLHDVQETRYSISTTPLSSFPS*

>peptide 6 (56 aa)
KALKSKVSHHQRSLLEQLGFWSEDLSLVTCHMRAKWKKKRMRRLKRKRRKMRQRSN*

Sequence

>CNT30165236
CAAAGCCCTAAAATCCAAAGTTTCACATCATCAGCGCAGCCTCTTGGAGCAACTAGGGTTTTGGAGTGAAGACCTAAGTTTGGTAACCTGTCACATGAGA
GCTAAGTGGAAGAAGAAGCGTATGAGAAGATTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAATTGAGCTTCTGGGATCTAGAATCATGGTTACT
GGAGCTTCTGATGGATAAGCATTTTCATGGAAGGTAAATGAAGTTTTATTATAGCTTATTATGTTGGTTGCTTGCCTGTTATTCGTGAAGTTCAAGCTGT
GGGAAATGGGGATTTAGGTTTACCTCTTTGTTTTGTCATGGGTTAAAGTAATGGGAAATAAGAGATTTAGGGTTTGTGATTCCTTAAATTAAGTGAAATC
ATTTAGTGTTTTATGTAGTATATTGCTCATCCTTGGGGGGTTCAGTCTTATTCTTTGTATTTTGAATTGCCCTTCACCTTGAAGCTTTAGTATCTGAGGA
GTTAAATTAGTCTGGAAGGGTTTTGCTTCAGTGCCACTGATAGATGGCCGCTTCTGGTTCTAAACTCTCAAATCAGGTCAGTTCATGCTTGTGCTTCTCA
GTGACACTCTGGTTCATGCTTTCTAGAATGTGAATGCTTAATTGTAGTTTGGTGTAGATCGCCGGCTTGATGTAAAATAATTGAATGGTGAATGGTCATT
TATTAGCAGAATGTTTCAGGTTTTGTATAAAGCTTTGATAAAATCAACGTATTACAATGAATATGAAGTTTTGTTTATTGATATACCAAGTATTTTTGTA
CCTGCATATTAGCCATACTAAAACAGCGACTGAATTATTTTGTAACAAAGATAAAAGAGTATATTTGTGATTAAATTAACTGAATTTTATATGTTCCCAA
GTGCTTCCATTTGGGTAACCATGTCAGAAGTGATTCGTAACAAGAGGCAGGAATTTTACATATTTTGAGCCTTCAGTTCCGATCAGAGTACTGATCACCT
GGTAACACCATTGAGCCTAACACAATTTGTAGACGTTTTAAAGGCTAAAAGCTGATGTTTCACTCTTAAACTAAAAGGGGAAACACGAATCTAAGGCCAA
AACTATGCTAAAATCTGCAACTCCTAATCAGAACTAGTAGTAGTGAAAATTTGATTGCCCAGAGCAGAGTCACAGTCAAAAGAAGCAACAGAGAAAAAAA
AAAAAAAAAAAAAAGGAAGCTGAAAATTCTTTATGGATCTTTTGACCATCGCTAGCTGGGAGCCTGGGATCCTTCAGCCCGTAATTTATCCACTAACTCC
TGACTTCCTCAGCTATCATACGCTGCATGATGTTCAAGAAACAAGATACTCCATCTCCACCACACCCCTGTCCTCATTCCCTTCATAGTCTTCACTTCCT
TTTCACCTCCCTCTTTGTTCTTTT