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Detailed information on CNT30164954


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Pistacia veraCorylus avellana29.7421.3191.2191forward
CNT30516799Pistacia veraJuglans regia30.075.9490.2292forward
CNT30698212Pistacia veraQuercus lobata27.7812.8489.4185forward
CNT30372926Pistacia veraArabidopsis thaliana30.0723.9685.8792reverse complement
CNT30275131Pistacia veraChenopodium quinoa23.866.1287.6773forward
CNT30729814Pistacia veraCorchorus capsularis27.7810.494.1285forward
CNT3069543Pistacia veraQuercus suber27.7810.9388.2485forward
CNT30402677Pistacia veraBeta vulgaris30.074.7686.9692forward
CNT30196357Pistacia veraPisum sativum23.868.2986.373forward
CNT30505263Pistacia veraNicotiana attenuata23.539.3686.1172forward
CNT3043416Pistacia veraPrunus dulcis31.7387.6397forward
CNT30540682Pistacia veraBrassica napus23.210.6385.9271forward
CNT30235661Pistacia veraBrassica oleracea23.214.9887.3271forward
CNT30508850Pistacia veraSolanum lycopersicum30.3914.1682.893forward
CNT30309702Pistacia veraCamelina sativa23.27.2985.9271forward
CNT3077592Pistacia veraBrassica juncea23.29.7385.9271forward
CNT30264014Pistacia veraBrassica rapa23.29.6585.9271forward
CNT30611294Pistacia veraArabis alpina23.24.390.1471forward
CNT30598132Pistacia veraFraxinus excelsior24.1811.8286.4974forward
CNT30360842Pistacia veraLactuca sativa23.8611.0389.0473forward
CNT30643841Pistacia veraCannabis sativa29.7412.485.7191forward
CNT30111654Pistacia veraFicus carica25.8211.9788.6179forward
CNT30723681Pistacia veraLupinus angustifolius23.8610.4787.6773forward

Expression of CNT30164954

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLNSKRAMNWVQRKIYLYNVTFGLYMLDWWEHYLFSILIFVLL*

>peptide 2 (37 aa)
MSHLDFTCWIGGSIIFSVSSFLFYYKGYNMFIPLPNFS

Sequence

>CNT30164954
TGATTAGCTTGTTCTTATAAATTGTTGATAGTTTCAAGCATATTTGAAACTTTCAACAATTAAATCCAAATCAATGGCACTCGTTACATAGTATTTTAAC
CAACATGTCTGAATAACAAAGAAAGAAGAAAACTTTATGCTAAACAGTAAGAGAGCAATGAACTGGGTTCAACGCAAGATCTATCTCTATAATGTCACAT
TTGGACTTTACATGTTGGATTGGTGGGAGCATTATCTTTTCAGTATCCTCATTTTTGTTCTACTATAAAGGATATAATATGTTTATTCCCCTGCCTAATT
TTAGCC