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Detailed information on CNT30164689


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 9e-74

BLAST vs NONCODE:
NONVVIT003147, E-value = 5e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Pistacia veraSetaria viridis44.5548.6181.63245forward
CNT30517614Pistacia veraJuglans regia34.7336.3187.43191forward
CNT30377662Pistacia veraArabidopsis thaliana28.1817.1585.16155forward
CNT30278532Pistacia veraChenopodium quinoa33.6416.8384.86185forward
CNT30728459Pistacia veraCorchorus capsularis63.6456.4584350forward
CNT30629341Pistacia veraVigna unguiculata3216.1287.5176forward
CNT30709122Pistacia veraGlycine max23.0936.0888.98127forward
CNT30189101Pistacia veraSecale cereale48.9125.5981.41269forward
CNT30395817Pistacia veraTriticum turgidum23.8216.9587.02131forward
CNT30561419Pistacia veraActinidia chinensis84.9174.0183.08467forward
CNT30238817Pistacia veraBrassica oleracea41.2742.5982.82227forward
CNT30144977Pistacia veraMedicago truncatula96.5557.6581.54531forward
CNT30264134Pistacia veraBrassica rapa36.9123.4181.77203forward
CNT30605054Pistacia veraGossypium raimondii35.2734.2290.21194forward
CNT30126269Pistacia veraCorymbia citriodora17.6425.5984.5497forward
CNT30686114Pistacia veraTriticum urartu23.8221.9187.02131forward
CNT30349705Pistacia veraEragrostis tef28.9122.6883.65159forward
CNT30365925Pistacia veraSorghum bicolor54.9134.0181.13302forward
CNT30120413Pistacia veraCitrus clementina98.9167.2488.79544forward
CNT3038556Pistacia veraCucumis melo33.8223.5484.95186forward
CNT30149228Pistacia veraBrachypodium distachyon35.2740.8482.47194forward
CNT30101562Pistacia veraOryza rufipogon59.8238.0882.07329forward
CNT30585446Pistacia veraEchinochloa crusgalli26.3648.0185.52145forward
CNT30116414Pistacia veraOryza nivara12.732588.5770forward
CNT30333676Pistacia veraCynara cardunculus82.7388.1880455forward
CNT30725707Pistacia veraLupinus angustifolius35.6435.5787.24196forward
CNT3048947Pistacia veraCucumis sativus26.3610.2584.14145forward

Expression of CNT30164689

Peptides detected in this lncRNA

>peptide 1 (84 aa)
LLRLPNTLVIRVVNKWGMPFTLISRILLHWPLPYTTSRGCLTLWVINLRGLPFTILLIIPIFWLLVIWIRNCLLRNEWGFKIFR*

>peptide 2 (69 aa)
MSKFVRWDRWWELEVVFNVLSTLGILMLQDKVNLVSGPTFIWSKHNSIRRVIVKLFRFPTSLLGPQVFQI

>peptide 3 (37 aa)
MSGGSKSSDDRKFAFFFSSPSIKICNSLSGFKMAVYT*

>peptide 4 (30 aa)
MIGNLLSSSPLHQSKFATHYLVSRWRCTHE*

Sequence

>CNT30164689
ATCTCTTGAGGCTTCCAAATACCCTTGTAATTAGGGTTGTCAATAAGTGGGGCATGCCATTTACCCTTATAAGCAGGATTCTTCTTCATTGGCCTCTTCC
ATACACCACATCCAGGGGCTGTCTCACACTTTGGGTTATCAATCTTCGGGGCCTCCCATTCACCATCCTCCTCATCATCCCAATCTTCTGGCTTCTTGTC
ATCTGGATCAGGAATTGTCTTCTCAGGAATGAGTGGGGGTTCAAAATCTTCAGATGATAGGAAATTTGCTTTCTTCTTCTCCTCTCCATCAATCAAAATT
TGCAACTCATTATCTGGTTTCAAGATGGCGGTGTACACATGAGTAAGTTTGTCAGATGGGACAGATGGTGGGAACTTGAGGTGGTGTTCAATGTACTGTC
CACTCTTGGGATTCTTATGCTTCAAGATAAAGTGAACCTTGTTAGTGGCCCCACATTTATCTGGTCCAAACATAATAGCATAAGGAGAGTCATTGTCAAA
CTCTTTAGGTTTCCAACCAGCCTCCTGGGGCCGCAGGTATTTCAGATATG