CANTATAdb - search

Detailed information on CNT30164510

BLAST search results

BLAST vs Swiss-Prot:
sp|P62981|RS27A_SOLTU, E-value = 4e-64

BLAST vs NONCODE:
NONGMAT000502, E-value = 4e-36

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30547292	Pistacia vera	Ipomoea triloba	19.27	28.45	89.69	194	forward
CNT30518633	Pistacia vera	Juglans regia	35.75	84.11	85.56	360	forward
CNT30728895	Pistacia vera	Corchorus capsularis	19.86	27.59	90.5	200	forward
CNT30605213	Pistacia vera	Gossypium raimondii	26.71	89.07	88.85	269	forward
CNT30571087	Pistacia vera	Vitis vinifera	41.81	63.5	86.22	421	forward
CNT30580001	Pistacia vera	Echinochloa crusgalli	38.73	53.42	83.59	390	forward

Expression of CNT30164510

Peptides detected in this lncRNA

>peptide 1 (33 aa)
FNNNLNHSKFNTHQIKTLDYIFILGRKEKFYQN*

>peptide 2 (49 aa)
MSRCWSGGMPSLSWILAFTLSMVSEDSTSRVMVLPVRVLTKICMAADEG*

>peptide 3 (31 aa)
MKDCRAAFIMCFRVRDYGCIVGFFAKRPLLF*

>peptide 4 (32 aa)
MLDLLWFRVESTLSGCCSRLGYGRLRAACRRR*

>peptide 5 (53 aa)
MLQYPVLNIVRNNDKTLKHETIKHKIHDNTTYNNIKKERNNLINHHQPSGKHK*

Sequence

>CNT30164510
CGTTCAACAATAATCTCAATCACTCAAAATTTAACACCCACCAAATCAAAACTCTAGATTATATCTTTATACTAGGCAGGAAGGAGAAATTCTACCAAAA
TTAAACGAAGTAAGCTTAGGTAAATAAACCATCCAAAATTCAGGAATTAATATGGAGAACCTTTAGAAGCAAATGCTCCAATATCCAGTATTAAACATAG
TACGAAACAATGACAAAACCCTAAAACACGAAACCATAAAACACAAAATCCATGATAATACTACTTATAATAATATTAAAAAAGAGCGAAACAACCTAAT
CAATCACCACCAGCCTTCTGGTAAACATAAGTGAGCCCGCACTTTCCACAGTAGTGCCTGTCAAAGTGGTTAGCCATGAAGGTCCCAGCCCCACACTCGG
CGTTCGGACACTCCTTCCTCAGCCTCTGAACCTTTCCAGAGTCATCCACCTTATAGAACTGCAACACCGCGAGCTTAACCTTCTTCTTCTTATGCTTGAT
CTTCTTTGGTTTCGTGTAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCTAGGGTACGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGCCGCTGTTG
GTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCAACCTCGAGGGTTATGGTCTTGCCGGTTAGGGTT
TTGACGAAGATCTGCATGGCTGCAGACGAAGGTTGAGACGGCTACTCTGAAATGAGGGGAGTTGTCAGATGAAGGATTGTAGAGCGGCTTTTATAATGTG
TTTTAGGGTTAGAGACTATGGGTGTATTGTGGGTTTTTTTGCTAAAAGACCCTTACTTTTTTAGAATATTATGGTACTTTCAATTTTGACGTTCTTTTAT
AATTTATATTTTATAGGGTAGAAAGTGGAAAAAGCCAAAGTTTAGCATGCACCTGTGTGGATTGTGTACCGGAGTTGATGCTTGTGCGGATATGAAGGCC
CTTGATG