Detailed information on CNT30163577


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677131Pistacia veraSetaria viridis19.6733.6583.18107forward
CNT30559226Pistacia veraActinidia chinensis24.0821.1387.79131reverse complement
CNT30234658Pistacia veraBrassica oleracea22.4330.0581.97122forward
CNT30171615Pistacia veraTrifolium pratense22.986.3288125forward
CNT30597864Pistacia veraFraxinus excelsior22.988.9484.8125reverse complement
CNT30570089Pistacia veraVitis vinifera22.436.5181.15122forward
CNT3037338Pistacia veraCucumis melo24.0832.5987.02131forward
CNT30604860Pistacia veraOryza punctata19.6724.184.11107forward
CNT3049161Pistacia veraCucumis sativus20.7732.2987.61113forward

Expression of CNT30163577

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMPTMRPYKARASAKMRMRIIPTKSFGCCAL

Sequence

>CNT30163577
GAAAAGTATAGCAAAATAATTATAGGCAACTTTCTATGAAAATTACAACTGAATCCACAAAAAGCAAAGCATTTAACATTAAACAATGACAACATTATTT
TATTAACTGAGGAAACTAATTTCTACTTCTACATTCTACCGTCAGTTTCCAGTTCCACAGTCATTCAATCCGACTGGTAGAATAATCACTCACACCCACA
GACGATAAATTTTGAAGTTGATAATACTTCAGTAGAGTACCACTTCCAACCACAGAAAATATGAACTAATTCTTAATGACAGGCCACAACAACAGTAAGC
AGAACACGCTCTACTCTAATCAGCTCTTGACTGACCAGCTCGGGAAGAGAGAATGATGCCAACAATGAGACCATACAAGGCCACAACAACAGTAAGCAGA
ACACGCTCTACTCTAATCAGCTCTTGACTGACCAGCTCGGGAAGAGAGAATGATGCCAACAATGAGACCATACAAGGCCAGAGCTTCAGCGAAAATGAGA
ATGAGAATCATCCCTACGAAAAGCTTTGGCTGTTGTGCATTGGC