Detailed information on CNT30163337


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONCQUT004405, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30550233Pistacia veraIpomoea triloba10049.195.31384forward
CNT30519180Pistacia veraJuglans regia99.9341.8295.371383forward
CNT30619307Pistacia veraSesamum indicum86.2771.2893.631194forward
CNT30730599Pistacia veraCorchorus capsularis71.3991.1496.86988forward
CNT30507933Pistacia veraNicotiana attenuata99.9368.0395.011383forward
CNT30711221Pistacia veraGlycine max93.7194.9595.141297forward
CNT3047210Pistacia veraPrunus dulcis10043.0293.711384forward
CNT30383474Pistacia veraTriticum turgidum98.9981.2192.261370forward
CNT30545324Pistacia veraBrassica napus10079.7292.271384reverse complement
CNT30217525Pistacia veraKalanchoe fedtschenkoi99.6476.8790.431379forward
CNT30355986Pistacia veraLactuca sativa98.1249.7490.871358forward
CNT30433935Pistacia veraPapaver somniferum100.2973.8793.591388forward
CNT30574469Pistacia veraVitis vinifera82.5162.396.061142forward
CNT30496898Pistacia veraDigitaria exilis98.9975.7390.581370forward
CNT30176196Pistacia veraVigna angularis84.1877.5194.511165reverse complement
CNT30558388Pistacia veraPanicum hallii91.5591.2292.981267forward

Expression of CNT30163337

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MDWERPLRGPYPGVEQSTQKWYGQGESDCLIKTKHCDGPGGCSRNVISAQCSECQSEEIQPSAGKRRE*

>peptide 2 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGRISGERRPC*

>peptide 3 (53 aa)
ATLETAQPEVGSSGRKIPARRMVSGAPPVALENLEDRVPSMPGHTHNRIRFPR*

>peptide 4 (30 aa)
HPRNSSARGRVQRPKDPRTSHGVWCTPGGP*

>peptide 5 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWQNQRGKKTLLSLTLVRLCEMT*

Sequence

>CNT30163337
GCCACCCTAGAAACAGCTCAGCCAGAGGTAGGGTCCAGCGGCCGAAAGATCCCCGCACGTCGCATGGTGTCTGGTGCACCCCCGGTGGCCCTTGAAAATC
TAGAGGATCGAGTGCCATCCATGCCCGGTCATACTCATAACCGCATCAGGTTTCCAAGGTGAACAGCCTCTAGTCGATGGAACAATGTAGGCAAGGGAAG
TCGGCAAAATAGATCCGTAACTTCGGGAAAATGATTGGCTCTGAGGGCTGGGCACAAGGGTCCTAGTCCTGAACCTGTCGGCTGTCGGTGGACTACTCAA
GCTGGTCCTGCGGCGAGAGCGGGTCACCGCGTGTCGGTCGGGGGATGGACTGGGAACGGCCCCTTCGGGGGCCTTATCCAGGCGTCGAACAGTCGACTCA
GAAGTGGTACGGACAAGGGGAATCTGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCGGTGGATGCTCACGTAATGTGATTTCTGCCCAGTGCTCT
GAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACG
CGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGAC
CCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGTATAAGTGGGAGCCGAAAGGCGAAAGTGAAATACCACTACTTTTAACG
TTATTTTACTTATTCCGTGAATCGGAGGCGGGGCACTGCCCCTCTTTTTGGACCCAAGGCCCGTCTCGGCGGGCCGATCCGGGCGGAAGACATTGTCAGG
TGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAA
AAGCTCGTTTGATTCTGATTTTCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAATTTGAAGCTAGAGGTGTCAGAAA
AGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAA
TTCACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTTTACCCTACTGATGGCAGCGTCGT
AATAGTAATTCAACCTAGTACAAGAGGAACCGTTGATTCGCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAATGGCGCGAAG