Detailed information on CNT3016329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678320Zea maysSetaria viridis20.5646.1994.17103forward
CNT3019911Zea maysCitrullus lanatus21.9617.0882.73110forward
CNT30404513Zea maysBeta vulgaris17.5622.2285.2388forward
CNT30250827Zea maysAvena sativa26.7538.6282.84134forward
CNT30679535Zea maysTriticum urartu14.1727.4188.7371forward
CNT30361762Zea maysSorghum bicolor27.3541.7797.08137forward
CNT30100738Zea maysOryza rufipogon16.3721.9891.4682forward
CNT30116122Zea maysOryza nivara23.1543.2884.48116forward

Expression of CNT3016329

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MCPFRLYCSMRSNIFLNSACSSLSLEGLPWSPQTTTRSASCATRCTGSRWTGPRQETRC*

>peptide 2 (94 aa)
MDRSAPGDTMLNLGSNTSMPWTTRYRVTQDISLSEVTMRGEDNDIEHHGDRSKELLQGGRIWGLQEVQEEVDSLLCTLSAITPTLLQTKFLEPVF

>peptide 3 (47 aa)
MGIVPRNFSRVDGSGASRRSKRRWIVSCARLAQSPQPFSRPSSWNLFL

>peptide 4 (32 aa)
WCRRCSGTARRCGRGSSGRRSSGCARSGCTAR*

>peptide 5 (70 aa)
GVADVAVQLAVADAVHLGGDPADVPVQVVLLDEVKHLLELGLLLLVLGRVAMVAADDHEVSLLCDSVYGK*

Sequence

>CNT3016329
TTGGTGTCGCAGATGTAGCGGTACAGCTCGCCGTTGCGGACGCGGTTCATCTGGGCGGAGATCCAGCGGATGTGCCCGTTCAGGTTGTACTGCTCGATGA
GGTCAAACATCTTCTTGAACTCGGCCTGCTCCTCCTTGTCCTTGGAAGGGTTGCCATGGTCGCCGCAGACGACCACGAGGTCAGCCTCTTGTGCGACTCG
GTGTACGGGAAGTAGATGGACAGGTCCGCGCCAGGAGACACGATGTTGAACTTGGGGTCGAACACATCAATGCCGTGGACAACGCGGTACAGGGTAACCC
AAGACATTAGCTTGAGCGAAGTAACCATGAGGGGAGAGGATAACGACATTGAACACCATGGGGATCGTTCCAAGGAACTTCTCCAGGGTGGACGGATCTG
GGGCCTCCAGGAGGTCCAAGAGGAGGTGGATAGTCTCCTGTGCACGCTTAGCGCAATCACCCCAACCCTTCTCCAGACCAAGTTCCTGGAACCTGTTTTT
G