« Back to Pistacia vera search


Detailed information on CNT30163033


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W3M3|RAP29_ARATH, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Pistacia veraQuercus lobata7.323.3587.8899forward
CNT30380859Pistacia veraManihot esculenta8.9224.4986.78121forward
CNT30488421Pistacia veraOlea europaea10.131.2181.75137forward
CNT30563605Pistacia veraActinidia chinensis7.0120.0886.3295forward

Expression of CNT30163033

Peptides detected in this lncRNA

>peptide 1 (33 aa)
EWRGLYSPNSPPMWDPLCRRLGKLSLAKSPRSL*

>peptide 2 (31 aa)
GMERLVLAEFATDVGPVMSEVRKVEPCEVAT*

>peptide 3 (72 aa)
MSLPHSSVEFCGLWWTTHLLHWDGLWRKKVKVMTLLRLLWLLPENLVWNLVLEVHLSLDLLDLELGEVVEPN*

>peptide 4 (30 aa)
MWSKHQGTNWALVMMRLLGKEKKRGNCCKK*

Sequence

>CNT30163033
AGGAATGGAGAGGCTTGTACTCGCCGAATTCGCCACCGATGTGGGACCCGTTATGTCGGAGGTTAGGAAAGTTGAGCCTTGCGAAGTCGCCACGTAGCTT
ATAGGCGGCTTCTTCAGCAGTGTCAAAAGTTCCAAGCCAGAGCCGGGTCCTGTTCTTGGGGAGTCGGATCTCGGCTACCCATTTGCCCCAATGTCGCTGC
CTCACTCCTCTGTAGAGTTTTGCGGGCTTTGGTGGACAACCCACTTGCTTCATTGGGACGGGCTTTGGAGAAAGAAAGTTAAGGTGATGACTTTGTTGCG
GTTGTTGTGGTTGTTGCCAGAAAATCTGGTTTGGAATCTGGTTTTGGAGGTTCATCTGAGTTTGGATCTGTTGGATTTGGAACTGGGTGAGGTTGTTGAG
CCCAATTGAACCTTGCTGCTGCTGAAGACCTAGTAAAGGGTCTTGGATCGAGAACCCGTTTGAAAAGAGATGGGCTGACGATGTGGAGCAAGCATCAGGG
TACAAATTGGGCTCTGGTAATGATGCGGTTGTTGGGAAAGGAGAAAAAGAGAGGAAATTGTTGTAAGAAGTAGAGGAGATAGAAGAATAAGAGGGAGAAG
GAGAGGGAGAGGGAGAAGGGTTATGAGAAGGAGAAGGTGTTGTTGATGAAGAAGAAGAAGCACTTCTCATAAAAGGTTCCAGTGCTTCCATTAATTCACC
CCCAAAGGAGTCTGATTGAAGAGGTCCGCTACTGTAGAAATCCATTGTAGCTGCCATATCTTCCAAAACACTAAAACTGATAAGATCACAAACTAAAATA
AATCTGTTAACAAAGAAAGAAAAATAAAAACCAACCTGGTTCTCGTTAAAATTAAGAACAGGTAAATTTTTATAAAAATATATATTTATATATATATCAA
AGAGGTTTAAAATACACAACCCCTTCAATTTCAAGAACCTAAAAACCAACCTTAAGGGAACAAAAAATATCCCTACAAGCTGATTCAACTAAAAAAAAAA
AACAGATCTTCTAAAATTTACGAGAAAATACAGTTAAAAAAAACCTGGATCTCGATTCTGAAAACACCTGGCTTTCGAGAAATCCTTCTAAGTTTGCTTT
TGAACCATTTTTTTGTTTTAGTTGTTTTGAAAACAAACCCAAAAATCAGATTTTTCTAAAAGACAGATGATTAACAGAAAGGGATTCAGAGAAGCGGGGA
ATCACAGAGGGGGGGGATTGTAAACAAATCAAAGGAAAACCAAAATCACACTCAGTTCTGAGCTCTCAAATCTCTCTCTCTTGTTTTTTTTTTTTCTGTG
TTTTAGTGTTTATCTCTCAACCTTTCTTGAGCTAGTCTCTGCATCTACTTCAACAT