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Detailed information on CNT30162794


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30404925Pistacia veraBeta vulgaris21.1226.6288.89189reverse complement
CNT30543269Pistacia veraBrassica napus24.137.386.11216forward

Expression of CNT30162794

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MGDKGFIDFVAHLLEVNLRTCLSAAEALKHPWQS*

>peptide 2 (73 aa)
PDVVTFNTMINGLCKEGKMEEANGLLELMSQRGLQPDAVTFTTMISGLCTGGKMVEGNWLLELMSQRGLQPII*

>peptide 3 (56 aa)
MHSCISVFNYQEFKFARIMYFKDSFLALFYKVVSESHYSLVVHQENSSLLFEEIYFQ

>peptide 4 (39 aa)
MKYDFPFSCIVVFQFSIIKNLNLHVSCISRIHSSLCFIR*

Sequence

>CNT30162794
CCCTGATGTGGTGACTTTTAATACAATGATAAATGGGCTTTGCAAGGAGGGGAAGATGGAGGAAGCTAATGGGTTGTTGGAATTGATGAGTCAAAGAGGT
TTGCAGCCTGATGCGGTGACATTTACTACAATGATAAGTGGGCTTTGCACGGGTGGGAAGATGGTGGAAGGCAATTGGTTGTTGGAATTGATGAGTCAAA
GAGGTTTGCAGCCTATAATCTGATCTTCTAGTCTTGACCTTTATAAGTACCCATAGGCTGATTTGGTATACTGCTTCTCCTAACCGTATGGAATAGAAAT
TCTTCATGTAAAACCTGCTTGATTTAGATTGGGAGAATCCTATGGTTTTATGAAAGCATGTGCTATGGTTCGAATCCGTACTCAATCCTATTTATAGGAG
CAGTTGACAATTGAATCCAATTTTTCCATTAATTTCGTATCCGTAATAGTGCGAAAGGAAGGCTTGTCTCCGAGTTGTTCAAGAATAGTGGCGTTGAGTT
TATTATTTCACTGATTGCTGATGGGGGACAAAGGCTTCATTGACTTCGTTGCTCATTTGCTTGAAGTGAATCTTAGGACATGCCTTTCTGCAGCTGAGGC
TCTGAAGCACCCATGGCAATCATAGCCTTAGAAGTTTCAACCCATATCAGCTCACACAATCTGTTTTCACTCAAATTAAATTCATGTTGTTGGTGACATA
TGAAGTATGATTTTCCTTTCTCATGCATAGTTGTATTTCAGTTTTCAATTATCAAGAATTTAAATTTGCACGTATCATGTATTTCAAGGATTCATTCCTC
GCTTTGTTTTATAAGGTAGTATCGGAATCTCATTACAGTCTTGTTGTACATCAGGAGAATTCTTCTCTCTTGTTTGAGGAAATATACTTTCAGTA