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Detailed information on CNT30162467


BLAST search results

BLAST vs Swiss-Prot:
sp|P45735|PALY_VITVI, E-value = 3e-47

BLAST vs NONCODE:
NONPOPT001615, E-value = 5e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727764Pistacia veraCorchorus capsularis37.2227.6283.84198forward

Expression of CNT30162467

Peptides detected in this lncRNA

>peptide 1 (32 aa)
QLFTWTLIQAQRKVQHNICYSYTLNNAPIFTT*

>peptide 2 (38 aa)
IIYLDFNPGSTKSSAQYMLLLYIEQCSNLYYLIVGKNE*

>peptide 3 (40 aa)
MILPWHIAVNTLSNSSPGDFTFSPVKNPVTSSSLTNLYNG*

Sequence

>CNT30162467
CAATTATTTACTTGGACTTTAATCCAGGCTCAACGAAAAGTTCAGCACAATATATGCTACTCTTATACATTGAACAATGCTCCAATCTTTACTACTTAAT
TGTGGGAAAAAATGAGTAGCCATTTCTCATTTGCTATATTCAGAAAAGCACATTACAAATGAATATTTAATCACTTAATAACATAGGCATTAGGCAATTC
CTTTCACAGGGAATTGAAAATAATGAAATTTAAAGAAAATGAAAAATAAAAAACACTCTAGCAGAGTGGAAGAGGGGCACCATTCCAGTCTGTGAGGCAC
TCTAGCATTGGATCAATGATCTTACCCTGGCACATAGCTGTGAATACTTTATCAAATTCCTCCCCTGGTGACTTTACTTTTTCACCAGTTAAGAATCCTG
TTACTAGCTCTTCCCTCACAAACTTGTACAATGGATAAGATCTGCATTCTTTGATCCTATTGGGAATTGCTGCATTTCCATTCTCAACCACAATCCTAGC
ACTCTCCACCACTTTAGGCAAAACGGCCTTCA