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Detailed information on CNT30162096


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000586, E-value = 1e-64

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672164Pistacia veraSetaria viridis42.0915.0498.4125reverse complement
CNT30283003Pistacia veraChenopodium quinoa42.0913.09100125forward
CNT30406993Pistacia veraBeta vulgaris25.2519.388475forward
CNT3089926Pistacia veraSolanum tuberosum42.095.6599.2125forward
CNT30219690Pistacia veraHordeum vulgare42.0918.25100125forward
CNT30437461Pistacia veraAegilops tauschii42.0946.3100125forward
CNT30660235Pistacia veraTriticum dicoccoides42.0913.28100125forward
CNT30600960Pistacia veraFraxinus excelsior30.9810.1988.0492reverse complement
CNT30605073Pistacia veraGossypium raimondii42.098.2299.2125forward
CNT30713193Pistacia veraMalus domestica golden42.096.0398.4125reverse complement
CNT30346086Pistacia veraEragrostis tef42.0916.49100125reverse complement
CNT30571801Pistacia veraVitis vinifera42.099.58100125forward
CNT3056076Pistacia veraAmborella trichopoda42.095.4396125reverse complement
CNT3038324Pistacia veraCucumis melo42.096.6398.4125forward
CNT30331625Pistacia veraDioscorea rotundata35.6933.3399.06106reverse complement
CNT3099709Pistacia veraOryza rufipogon42.095.74100125reverse complement
CNT30557400Pistacia veraPanicum hallii42.099.1199.2125reverse complement
CNT3039925Pistacia veraMarchantia polymorpha42.0925.296125reverse complement

Expression of CNT30162096

Peptides detected in this lncRNA

>peptide 1 (67 aa)
IHLKCLHRAGVRLYTSCYHLAESCVFNKQSLPPGMCRFPNQKIGEHPCPSRKFTITHMSICRTTKNF*

>peptide 2 (30 aa)
MQDNQKLLNKNNQQEQEYQTIPQLESKRRR*

Sequence

>CNT30162096
ATTCATTTGAAATGCTTGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTG
GTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTGCCCTTCACGCAAATTTACCATCACTCACATGAGCATATGCAGGACAACCAAAAACTT
TTAAATAAGAATAATCAGCAGGAGCAGGAGTACCAGACCATACCTCAATTGGAGTCAAAAAGAAGAAGATAAGAGAAACTTTCTGGGCTATCAACCA