Detailed information on CNT30162048


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671247Pistacia veraSetaria viridis86.5913.5793.72239reverse complement
CNT30269710Pistacia veraChenopodium quinoa21.3814.0591.5359reverse complement
CNT3093646Pistacia veraSolanum tuberosum67.39991.94186reverse complement
CNT30226250Pistacia veraHordeum vulgare86.2318.0493.28238reverse complement
CNT30592653Pistacia veraMusa acuminata44.25.0991.8122reverse complement
CNT30627905Pistacia veraDaucus carota96.3810.5993.98266reverse complement
CNT30680520Pistacia veraTriticum urartu86.238.2293.28238reverse complement
CNT3054794Pistacia veraAmborella trichopoda34.783.3391.6796forward
CNT30578173Pistacia veraOryza barthii86.237.0193.7238reverse complement

Expression of CNT30162048

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VRGPLGQRQGVSMIPGRSRMTRECHVRLL*

>peptide 2 (32 aa)
SRTPWSKAGRKHDSGTEPYDARVSRTVTLRRV*

Sequence

>CNT30162048
GTTCGAGGACCCCTTGGTCAAAGGCAGGGCGTAAGCATGATTCCGGGACGGAGCCGTATGACGCGAGAGTGTCACGTACGGTTACTTTGAGAAGGGTGTG
ATACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCCTACTCACCTGGTCCATGCACATCGCTCTCTCCAGGAGGTTGGCCGCCTATCC
TAGATCTTCCCATTTTCAAGAAGATCCCGGGCTCGATCCGGTTTAGTATCAAGGTGATTCTTTTTCTGTTCCTATA