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Detailed information on CNT301613


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 3e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692428Zea maysOryza sativa47.7230.791.18272forward
CNT30678417Zea maysSetaria viridis28.4249.0995.68162forward
CNT30522336Zea maysSetaria italica27.3758.8794.87156forward
CNT30524833Zea maysPhaseolus vulgaris25.099.4585.31143forward
CNT30296550Zea maysTriticum aestivum34.0446.4189.69194forward
CNT30589135Zea maysMusa acuminata21.431.7787.7122forward
CNT30553163Zea maysOryza glaberrima63.1626.1887.22360forward
CNT30439764Zea maysAegilops tauschii28.9535.3391.52165forward
CNT30241770Zea maysAvena sativa13.1625.693.3375forward
CNT30448528Zea maysSaccharum spontaneum27.7210.1896.84158forward
CNT30683907Zea maysTriticum urartu46.4940.3390.94265forward
CNT30361641Zea maysSorghum bicolor35.0916.9997200forward
CNT30369879Zea maysOryza glumipatula63.1650.1487.22360forward
CNT30147849Zea maysBrachypodium distachyon32.1141.588.52183forward
CNT30100699Zea maysOryza rufipogon63.1632.7391.94360forward
CNT30575527Zea maysOryza barthii34.9131.5491.46199forward
CNT30116295Zea maysOryza nivara34.9121.1391.46199forward
CNT30603857Zea maysOryza punctata33.5121.9591.62191forward

Expression of CNT301613

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MPSTPRRSVLNTVRHTWREMSGRMLNRVRLNSCTAAGTSAPTASGAYPVAHAE*

>peptide 2 (40 aa)
GSPLKSSKKIGYQKSRTSRTLVLQSTVMARTANGAGRHII*

>peptide 3 (29 aa)
MTTRTVGGRRSASTGRARGGAPARGGRGR*

Sequence

>CNT301613
CGGCTCTCCATTAAAAAGCAGTAAAAAAATCGGGTACCAGAAGTCCAGAACAAGTCGTACACTCGTACTACAGTCTACAGTCATGGCGCGCACAGCAAAC
GGCGCGGGTCGCCACATTATCTGATCCCCGTCCCCGGTCTCGGCACGGGGTAAATCGAGGCGGTAAAAAATACCGATGACCACCAGGACCGTAGGTGGCA
GGCGCTCCGCTAGTACCGGGCGAGCGCGCGGCGGAGCACCTGCGCGAGGAGGCCGGGGGCGCTGAGGTGCGGGAGGTGGCCCTCGGTCTGGAGGAACTCG
ACGGCGGCCGGGACGGAGACGTCGCGGGTGGTCTGCACCACCACGCAGGGGGACCGCACCATGCCCAGCACGCCGCGGAGGTCGGTGTTGAACACGGTGC
GGCACACGTGGAGGGAGATGTCCGGCCGCATGTTGAACAGGGTGCGGCTGAACTCCTGCACCGCCGCCGGCACGTCCGCGCCCACCGCCAGCGGGGCGTA
CCCGGTCGCCCACGCCGAGTAGTTGGCCGCCATCGCGTCGAACACCTGCTGGATCTCCGGCAGCTCGAAC