Detailed information on CNT30160229


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Pistacia veraCoffea canephora3.3922.5394.5273reverse complement
CNT30403020Pistacia veraBeta vulgaris3.7129.393.7580reverse complement
CNT30611088Pistacia veraArabis alpina3.2920.9492.9671forward
CNT30653503Pistacia veraRosa chinensis3.4329.2594.5974reverse complement
CNT30214655Pistacia veraHelianthus annuus3.4834.5694.6775reverse complement

Expression of CNT30160229

Peptides detected in this lncRNA

>peptide 1 (59 aa)
LKKQKTKKKDQFCCNKKQLLHPRALTVRTIKSTHSSRSLPVRLVAEKIEEINGKLFRSL*

>peptide 2 (49 aa)
MCGSKQNFLNYKNRKDKGRGILRIELGTSRNQSENHTTRPNALLIDALM*

>peptide 3 (50 aa)
MPSGCCLQNLNKYPFPSPSIRVAFLVNISRRPIFFQSWLVMHFDVISLLR*

>peptide 4 (31 aa)
MNVHVWHVEADTCNLTSFKGYRYGYRFPTQP*

>peptide 5 (33 aa)
MCCFNFYFYLLFFFQSNGKNGFWFIISCVILRC*

>peptide 6 (29 aa)
MQKGFRNSFQTFGSPGAFATYSSGIRLYR*

Sequence

>CNT30160229
GTTAAAAAAACAAAAAACAAAAAAAAAGGACCAATTTTGTTGCAATAAAAAGCAGCTTCTTCATCCTCGAGCTTTGACGGTCAGGACAATAAAGTCTACG
CACAGCTCCAGGAGTCTTCCGGTCCGTTTGGTTGCCGAGAAAATCGAGGAAATTAATGGAAAACTATTTCGAAGCCTCTAGACTTCAAGCTAAAATACTT
ATCTTTGGTCTTTTGACTTTTCTTTGCCATATATTTTTCTAGCTGCCAAACCGAGCCTCACACTTCTCAGGCCTACCGCGCTTTCTGCTTGAACCAATCC
ATCAAAATGAGTATTGATGTAGTTCTGGTTTCATGCTCCTAGTAAGCTGCTATGCAAAAGGGTTTTAGAAATAGCTTTCAAACCTTTGGGTCACCTGGAG
CCTTTGCTACCTATAGTTCTGGTATCAGATTGTACAGATAATGTTTGTGTGGAAAGCTTTAGAAGAAATTTTATTTGTTACTTTAGATCAGTTAAAGCCG
TTGGAACAGATGTTCAAATGATTTGTAAGAGGATTTTGGCAAAGGGGTGCACAGTGCATATTGGAATCCATCTTTGAATTTGCTATCAAATGTACTTCTA
CACTATGAGGCACTGCACGTGTGCTCCCTTTTGTTTTGCTGTTGTGAGTTATAGTGTTTGGCAAGTTTAGGTAAATTTCTTCACTCTGAACTTTGAGGTT
GCACGTACAGTTGCCAACCCACTAAATATCTTGACTTATAAAGCTAAAATAAAAACAAGGGGATCCCAAGAATCAAACTTGGGACCTCCTGCACCCAAGG
CAAGAATCATACCACTAGATCAAATGCCCTCCGGTTGTTGCTTGCAAAACTTAAATAAATATCCCTTTCCTTCTCCAAGCATTCGAGTTGCATTCTTAGT
AAACATCTCTAGAAGACCAATATTTTTCCAGTCCTGGCTTGTAATGCATTTTGATGTGATATCCCTGTTAAGGTAGAAATCCCTTGGAAGAATTTGCATT
TGGTACTTTGAATCTTATGAAATGTTGGAACATATTGGATATCATCTTTGGATTTTCTGTGCAGATTTACTTAGTGGCATGAAACGATGCTCATATTTTG
CCTTCTAATTTTATTAACATGAACGTGCATGTTTGGCATGTTGAGGCAGATACATGTAATCTGACGTCTTTTAAGGGTTACCGGTATGGTTATAGGTTTC
CCACACAACCTTGAAATCAAGATCTGCTACTTGTTTATTTTTTTTCCATATATTGGTTGAGAATTTTGTCAGAAAACCTGTATGCAGTATCTGAATTCAT
CAAAATTTTATTTGTAGCTTTTTAGTCAACTTTAGGCCATATTGCTGACTTCCTAGAAAAGTAATATATTCATCAAAATTTTGTTTTGTATATTGTTAGT
CAACTTTGGGCCATATTTACTTATGGCATAGATAAGTAAAATAGTGTTATAACTAATGTGTGGGAGCAAGCAAAATTTTTTAAACTATAAAAATAGGAAA
GACAAGGGAAGGGGCATTCTGAGAATTGAACTCGGGACCTCTCGCAACCAAAGCGAGAATCATACTACTAGACCAAATGCCCTCTTGATTGATGCGTTAA
TGTAAATTTTCTTACTAATGCATTGGTTTTGTAGTATTCCGATTATTTGTAATTAAATTTGTCTATAGGATCAATATCTTCTGGTCTAACTCTTTGATGC
ATTTGATTAACCTGTATCACTGGCAGGAAGAGTGTCCAAAGCTTTAGCAAAATAAAAAGGAAAGTTGTGGGACCGTGGATCATACAAAAAGTTTGGCTCT
GTTCCATGCTGACATTGGTTTAGATTTCTTGTTGGAGGTATGATCCTAATTTCTAACTTTGGCCGAACTTCATGTCCAGATGTGCTGTTTTAACTTCTAT
TTTTATCTTCTTTTTTTTTTCCAATCAAATGGAAAGAATGGTTTTTGGTTTATTATAAGTTGTGTGATTTTGAGGTGTTGACTTTCAGAGACTCTATTAA
TATAGGAGTTAATCACACTCATGCCCATTAGGTTAATACATAACCCCAATCTGTTAGCTGTTGTTAGGGTATATTTAATGGAAAAAGTGATTGTTTGTTA
AAAAGACCTATCTACCCTTATGATGTTTATTACATTTAACTTTAACAATAAAGGCA