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Detailed information on CNT30160100


BLAST search results

BLAST vs Swiss-Prot:
sp|O49169|EF1A_MANES, E-value = 2e-128

BLAST vs NONCODE:
NONMEST004097, E-value = 4e-175

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30509820Pistacia veraSolanum lycopersicum22.695.5487.85214forward
CNT30440472Pistacia veraAegilops tauschii34.8555.4686.67330forward
CNT30228831Pistacia veraAnanas comosus22.3967.5286.79212forward
CNT30647369Pistacia veraRosa chinensis44.6746.6987.71423forward
CNT30684845Pistacia veraTriticum urartu30.5217.6489.97289forward
CNT30148140Pistacia veraBrachypodium distachyon36.9692.1189.14350forward
CNT3050518Pistacia veraCucumis sativus37.9157.8184.96359forward

Expression of CNT30160100

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MSLTAKRPRGGYSENVSTTMGLVGTILTNPASPFFKNLGSFSSSLPDRLSILVKISENLTAMWEVWQSSTGA*

>peptide 2 (40 aa)
MVHLNRLNFSGQSSGAKCNNHTRLEDTGFHTTHWDISNTTN

Sequence

>CNT30160100
AATTAATACAAAATTTCAGGACTCGGGCTCTTACCTCTAACAAAACTAAATAACTCAATTTAGCAATGCAGCATTAGCTATCAAATTGAAACCATGATGT
TTTAACATTTTGGGATTTGGTTCAGTAACACAAGAACTCATTTTAAAGCCTATAAAACCAAATCAAGAAAAGCAAATCCCGACTTCCATCACAACCAGTT
GAGCACCAGATGATATCCAACTGCTCAACTTTAGCGGTACTGTAATGGATATGGATATAAAAACTGTCCACAAAAACAACATTAAACAGAACAGAAAATA
CGCCTAGCTACCATAGACCTCCAAAACACCTCACTTCTTCTTAGCTGCAGATTTGGTGACCTTGGCACCTGATGGGTCCTTCTTGTCGACACTCTTGATG
ACACCAACAGCCACTGTCTGACGCATGTCCCTAACAGCAAAACGACCAAGGGGAGGGTACTCAGAGAATGTCTCGACAACCATGGGCTTGGTTGGAACCA
TCTTAACGAACCCAGCATCACCATTCTTCAAGAACTTGGGCTCCTTCTCAAGCTCCTTGCCAGATCGTCTGTCAATCTTGGTCAAGATCTCAGAGAACTT
AACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGAGCATAACCGTTACCAATCTGGCCAGGGTGGTTCATGATGATGACCTGAGAGGTGAAGTTAGCA
GCCTCCTTGGCAGGATCATCCTTGGAGTTAGATGCAACAAAACCACGCTTGAGATCCTTGACAGCAACATTCTTAACGTTGAAACCCACATTGTCACCAG
GAAGAGCCTCCTGGAGAGCTTCATGGTGCATCTCAACAGACTTAACTTCAGTGGTCAGTCCAGTGGGGCCAAATGTAACAACCATACCAGGCTTGAGGAC
ACCGGTTTCCACACGACCCACTGGGACATTTCCAATACCACCAATCT