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Detailed information on CNT3015998


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693619Zea maysOryza sativa41.7125.4391.3161forward
CNT30675823Zea maysSetaria viridis60.153.4692.67232forward
CNT30522940Zea maysSetaria italica59.8432.8192.64231forward
CNT3072234Zea maysQuercus suber27.7216.9883.18107forward
CNT30526608Zea maysPhaseolus vulgaris30.0514.3488.79116forward
CNT30200086Zea maysPisum sativum30.8322.3386.55119forward
CNT30179138Zea maysSecale cereale53.6325.6592.27207forward
CNT30397538Zea maysTriticum turgidum41.7126.4895.03161forward
CNT30172842Zea maysTrifolium pratense27.7219.3183.18107forward
CNT30246240Zea maysAvena sativa49.7439.9292.71192forward
CNT30668428Zea maysTriticum dicoccoides53.6337.0393.24207forward
CNT30451774Zea maysSaccharum spontaneum58.8125.7492.51227forward
CNT30136307Zea maysLolium perenne44.0428.6292.94170forward
CNT30722188Zea maysTriticum spelta53.6330.3191.79207forward
CNT30346527Zea maysEragrostis tef38.670.6292.62149forward
CNT30363575Zea maysSorghum bicolor59.0724.7391.67228forward
CNT30360466Zea maysLactuca sativa32.3829.6985.6125forward
CNT30369169Zea maysOryza glumipatula46.6331.4188.89180forward
CNT30319826Zea maysAsparagus officinalis29.7919.5692.17115forward
CNT30149313Zea maysBrachypodium distachyon28.531.5290110forward
CNT30557628Zea maysPanicum hallii59.8441.4792.21231forward

Expression of CNT3015998

Peptides detected in this lncRNA

>peptide 1 (43 aa)
YIKDINRAQKANAAATTTAATHLTVLLLYSCKKRRRVHVASLA*

>peptide 2 (99 aa)
HKRHQPSPESKRSGNYHRGNTPNRTTIVLLQEEETSARRIARLGAGELGDGFGFLLYRASLAASAASFSKMSLMKEFMMDMALDEMPMSGCTCFSTLKM*

Sequence

>CNT3015998
TACATAAAAGACATCAACCGAGCCCAGAAAGCAAACGCAGCGGCAACTACCACCGCGGCAACACACCTAACCGTACTACTATTGTACTCCTGCAAGAAGA
GGAGACGAGTGCACGTCGCATCGCTCGCCTAGGAGCTGGTGAACTTGGTGACGGCTTTGGCTTCTTGTTGTACCGCGCCAGCTTGGCCGCCTCCGCCGCC
AGCTTCTCGAAGATGTCGTTGATGAAGGAGTTCATGATGGACATGGCCTTGGACGAGATGCCAATGTCCGGGTGCACCTGCTTCAGCACCTTGAAGATGT
AGATCTTGTACGTCTCCACCGACTTCTTTGCCTTCTTCTTCCCCTTCTTCTCGCCACCCTCCTTGCCTGCGGACTTGCCCGCGGGG