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Detailed information on CNT30158332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730496Pistacia veraCorchorus capsularis33.0912.4293.33135forward
CNT30502643Pistacia veraNicotiana attenuata257.8892.16102reverse complement
CNT30237740Pistacia veraBrassica oleracea46.0815.6886.17188forward
CNT3077654Pistacia veraBrassica juncea46.0841.7886.17188reverse complement
CNT30610163Pistacia veraGossypium raimondii33.5825.7591.97137reverse complement
CNT30433662Pistacia veraPapaver somniferum22.556.8291.392forward
CNT30320661Pistacia veraAsparagus officinalis25.4947.4991.35104reverse complement
CNT30151250Pistacia veraBrachypodium distachyon21.0813.9483.7286reverse complement

Expression of CNT30158332

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNKFKLENDLFDSRRMRAKGVDGERSLVFNIRCVIGSGKKNNLLL*

Sequence

>CNT30158332
ATCTTTAATTAACTCACCACAAAGCAAAACGAAGAATTAAAGAAACCCGAAAAGTGTTAATGAAAGACTAAAAATGGAGAAACGTATACGAAAAGAGGAA
AAGGTTATAGCAAGAAAGTGTGAGAGAGAAATGGGGTACGAATATGGCGAAGTATGAGGAGAATTTAAAGAGTAGAGGGTGTGAAAAGAGAGGAGGGAAA
AAAAAATAAAGAAATAAGTAAATAAAAATGAAGTAGAAGAACCCAGATTCCAAATGAACAAATTCAAACTTGAAAATGATCTTTTTGATTCTAGAAGAAT
GAGGGCCAAAGGGGTTGATGGAGAAAGATCTCTTGTTTTTAATATAAGATGTGTGATTGGATCTGGTAAAAAGAATAATCTTCTCCTTTGAGAATAATGA
AAAATTTA