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Detailed information on CNT30157858


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 3e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3097992Pistacia veraSolanum tuberosum22.1461.2578.18275forward
CNT30568460Pistacia veraActinidia chinensis15.4622.5485.94192forward
CNT3050712Pistacia veraCucumis sativus7.174386.5289forward

Expression of CNT30157858

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MTVVLLVNVCTGEVFTLELHTNFEEIERMSGAARHN*

>peptide 2 (35 aa)
TVNGPCLEIVGINPLYSAMGPSALTVFNAQSMAPL*

Sequence

>CNT30157858
CACAGTGAATGGTCCCTGCCTGGAAATCGTAGGAATAAATCCTTTATATAGCGCCATGGGCCCCTCAGCCCTCACAGTCTTCAACGCGCAATCTATGGCC
CCACTATAAGCCGGTTTCATTCCGACCTCAACCTTCATATTCATAACTCTCGTCTTTATAACATCTATCGGATTCGACGCAATTGCCGCCACGAATCCCG
CCGCGAAACTCGCCGTCACTATCATCGCCCGGTTCACCGTAAGCGATGATCCGCGCCACAGGCTAGTAACTCCTTCCTGTTTTGACATTCGCGTAACGGC
GTCGATCACGCTCGTGTAGTTACGGCGCTGAGCGGGAGGGAGCCGACCGTCGGCTTGCATTCGAACCATTGCCACGTCAGCGGGGTTACCAACTGCCGCA
CCGATTCCTCCGGCTATTAAACCGGCTGCTATCTTTCTAGTCAAAGGCATGTTGTTAGTGTCTTTATCAGTCCATTTTTGTTTAAATACATCGTAGAGGC
CCATGCGGGTGGTGGAATAGAGTGTTTGACGGAGCACGGTAGCGGACACACCGGAGAATAAAGCGGCAACGCCTTCGCTTTGGACGATCCGCATGCCGAC
AGAGACGAGGCCGACGCGTGGAGGTTGTGGTTGAGCAGTTGAAACAGGGATATGAAGGGAATTAGAGGGAATGACGGTGGTTTTGTTGGTTAACGTTTGT
ACCGGGGAGGTTTTCACCTTGGAGTTGCATACGAACTTTGAGGAGATCGAGCGGATGAGTGGAGCAGCCCGCCACAATTGAGGCAATACCGCCTTCAACG
AAACCTTTGACACCCATTCTAGTTTAAGGTTTTGATCAATTGAAAAGGAAAAAGCTAAGTAAAGATCTATAAAACATAGAAAGGGTGGTTAGTGGAATTG
TGAAGTGCAGAAGGAAGAGTTGTGAGAATTTATAGTGAGAAAGAGAGAAAGGGGAAAGAGGGAGGAAGTGGATGAATACGCGGCTGTTTGGTGGTCTACA
GATGCCCTTAAACGACCGTTCACTATTACTATTTCTAAATTCTAACATTTGACTCAAACCCTAATTTATTCCACGTCATTCTTATATTCTTCATTTGGGC
TTAATCCCCATTTGTTTGGGTAAACAATAATCCCATTTTATGGGATATTTTGAGTTCAGAGGTCTTTTTGAAAACTCTAAAAAATTACATAAAAGATATG
TACAGCAGTCAGCAGAGTAGACAAAACTAATCATTCAATAAA