CANTATAdb - search

Detailed information on CNT30157648

BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH05|UBI2P_PETCR, E-value = 0.0

BLAST vs NONCODE:
NONTPRT002153, E-value = 2e-125

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3019912	Pistacia vera	Citrullus lanatus	67.16	54.7	83.26	914	forward
CNT30171101	Pistacia vera	Trifolium pratense	67.23	55.02	84.48	915	forward
CNT30704865	Pistacia vera	Prunus avium	66.94	81.78	84.74	911	forward
CNT30120580	Pistacia vera	Citrus clementina	66.05	82.4	85.43	899	forward

Expression of CNT30157648

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSRVMVFPVRVLTKICIPPRRRRTRCRVDSFWML*

>peptide 2 (41 aa)
MLDNGLRNHHRGDGAPGEGLTPSECCNQPEYGHPPAAFQRR*

>peptide 3 (40 aa)
MVSELSTSRVIVFPVSVLTKICMPPRRRRTRWSVDSFWML*

>peptide 4 (71 aa)
MERGLLLDVVVGQSTAVLELLSGEDQTLLVRWDPFLILNLCLDVVDGVGTLDLESNGLAGQSFHKDLHLKP*

Sequence

>CNT30157648
TTCCCAATCCATTTCCCATTTACTAAGTAAACACCATGAATATTGATACTAAAATCTCATAATTATGCAGAGATAAGGAAGCTTGATAATTCAAGTCACT
GATATATAACACATTGAAACCCAGAATATATTAAAAACCAGAGAAATTTATTGATAGATTAACTTAAATGTAAAGTTCTAATTGCCATATTAGGCATACT
ACAATCATATCAGCAATTCAATCACAACAACGACGCACTTGACAGACCACACACAAGACACAAACGACCCAACCAATCCACCATGCTAGACAACGGCCTT
AGAAATCACCACCGCGGAGACGGAGCACCAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGGCCATCCTCCAGCTGCTTTCCAGC
GAAGATAAGCCTCTGCTGATCCGGTGGAATCCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATCGTATCGGAGCTCTCCACCTCCAACGTAATA
GTCTTTCCGGTCAACGTCTTCACAAATATCTGCATACCTCCCCTCAAACGCAGCACCAAATGAAGTGTTGACTCCTTTTGGATGTTGTAATCCGCCAGGG
TCCTCCCATCCTCCAGTTGCTTTCCTGCAAAAATCAGACGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGT
GTCGGAGCTCTCTACCTCAAGAGTAATGGTCTTTCCGGTGAGGGTTTTGACGAAAATCTGCATTCCTCCACGGAGACGGAGGACGAGGTGTAGAGTTGAC
TCCTTCTGGATGTTGTAATCGGCCAAAGTACGGCCGTCTTCAAGCTGCTTGCCGGCGAAGATCAGTCGCTGCTGGTCCGGTGGGATTCCTTCCTTGTCTT
GTATCTTGGCCTTGACGTTGTCGATGGTGTCGGAACTCTCAACCTCGAGAGTGATTGTCTTTCCGGTGAGTGTTTTGACAAAGATTTGCATGCCTCCACG
GAGACGGAGGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGACGTTGC
TGGTCCGGTGGGATCCCTTCCTTATCCTGAATCTTTGCCTTGACGTTGTCGATGGTGTCGGAACTCTCGACCTCGAGAGTAATGGTCTTGCCGGTCAAAG
TTTTCACAAAGATCTGCATCTGAAACCATAAAAAATAGCACAAGCAAACAAATCAGAAACAAAGACAGAAAATAAAATAAAAAGATAAATTTAAAAGAAA
ATAAAGATAAATTACGTTGAGAGGATTTGGAGCTAGCTTTTGAAAAACGAGAAAGGGGGAT