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Detailed information on CNT30157617

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30511493	Pistacia vera	Solanum lycopersicum	20.66	16.11	97.22	144	reverse complement
CNT30596312	Pistacia vera	Oryza meridionalis	20.66	28.46	95.14	144	reverse complement
CNT30118490	Pistacia vera	Citrus clementina	13.06	20.54	91.21	91	forward
CNT30550626	Pistacia vera	Oryza brachyantha	17.65	41.98	95.12	123	reverse complement

Expression of CNT30157617

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTLMERVLEMPWIDKGCIPLAFIFLKPEID*

>peptide 2 (45 aa)
MAPKMYQGNLQNLLFLALYPYQISSFMRDSDPSENTVSFFFFFYS*

Sequence

>CNT30157617
GTAAGTTTTTAAGGGTTTTTTTGCCATTTTAAAAATTTTTGGGGGGTCATGTTATTTTAGAGGGTACCCAGAATCGGAACCGGAACCGTTGTTACAGGTT
TTGGTTCTGGGTACCTAGGAACAGGAACCGTCGGTTCCGGTTCTGGTTCCAAATTTCAAGGAACCGTTGGTTTTGGTTCCGGTTCCTTCTAAAAGTGCAG
GGTACCCGGAACCGAAAACCCCTAATGCTAAGGTCTCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGATTGGAA
GTAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTAGTCTAGCTCCATGGCACCGAAAATGTATCAGGGCAATTTACAGAATCTTCTTTTCTTAGCCCTT
TATCCCTATCAAATAAGTTCTTTCATGAGAGACTCAGACCCCAGTGAAAATACCGTGAGCTTTTTTTTTTTTTTCTATAGCTAGTCAGCCTCTTCTCTTG
GGGATGACACTTATGGAAAGGGTTCTTGAGATGCCATGGATAGACAAAGGATGCATTCCTCTCGCTTTCATCTTCCTAAAGCCCGAAATTGATTGAAGAA
AAAGCAAAGGAGTTGACTAAGCTGTGAGACGTTTCTTCGATTAAGGTTATCATGCCAGAGTTAGTTAGACACGTCAACAAGGTCAGTTTGCAGAAAT