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Detailed information on CNT30157603


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTPRT002187, E-value = 3e-145

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524649Pistacia veraSetaria italica78.0922.690.6745forward
CNT30640799Pistacia veraNymphaea colorata58.8173.7285.03561forward
CNT30730481Pistacia veraCorchorus capsularis58.645.4594.63559reverse complement
CNT30632345Pistacia veraVigna unguiculata86.6931.1391.17827reverse complement
CNT30712870Pistacia veraGlycine max87.7450.3691.52837forward
CNT3046714Pistacia veraPrunus dulcis17.7179.3485.8169reverse complement
CNT3092080Pistacia veraSolanum tuberosum28.9347.3494.93276forward
CNT30185187Pistacia veraSecale cereale78.0921.0690.47745forward
CNT30292784Pistacia veraTriticum aestivum78.0924.8590.47745forward
CNT30221907Pistacia veraHordeum vulgare73.6958.5390.47703forward
CNT30385334Pistacia veraTriticum turgidum78.0924.8590.6745forward
CNT30543268Pistacia veraBrassica napus78.332.5594.11747forward
CNT30435868Pistacia veraAegilops tauschii78.0953.4490.6745forward
CNT30242786Pistacia veraAvena sativa62.5868.9490.62597forward
CNT30670388Pistacia veraTriticum dicoccoides78.0926.5790.2745forward
CNT30140120Pistacia veraLolium perenne78.0922.4390.6745forward
CNT3017954Pistacia veraZea mays78.6219.7990.13750forward
CNT30655407Pistacia veraRosa chinensis102.129.1491.48974forward
CNT30689129Pistacia veraTriticum urartu64.4765.9991.87615reverse complement
CNT30721631Pistacia veraTriticum spelta78.0921.4590.34745forward
CNT3057903Pistacia veraAmborella trichopoda77.9931.0589.11744reverse complement
CNT30108930Pistacia veraOryza longistaminata78.0931.8490.6745forward
CNT30331546Pistacia veraDioscorea rotundata43.82100.2488.52418reverse complement
CNT30499372Pistacia veraDigitaria exilis78.0921.9290.6745forward
CNT30603680Pistacia veraOryza punctata78.0918.8890.6745forward
CNT30335929Pistacia veraCynara cardunculus9.6424.9394.5792forward

Expression of CNT30157603

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MYVAKYGDDLWLVVKGQPRSDIAGFPRNLFQ*

>peptide 2 (54 aa)
MASGERPTKIGYSWFSAKSISVERMMSMARGRALNGLGWPHFALPTPRKLRIQA*

Sequence

>CNT30157603
ACATCTGAGTAGCTAAAGGAAGGGAAATCAATAGAGACCCCGTTAGTAGCAGCGAGCGAGAGTGGATTGGGGGTTTGAAGAAAAACAAAGACGTCTTGTT
AGAGCCTCAACAAAGTGTTCACTTCTTTTTTGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAGCAAGCCCCTTTACTTGAGATTC
TATTAGTAAAGGGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGTCAAAGAAGGTGATAGCCCTGTAGATTCGTTCACATGGTTTGATCCTT
CCCAATAAAAAGTGGCGTGTTCGAACTCTGATCACTTTTACGTGAGAAAGGGGGACCACCGTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGAAGTA
GTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGTATTAAAGCGCACT
CACTCTAACGTCTTACCTTTTGCATGATGGGTCAGTGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGTGTAGGCACTTTCTAGAGGTAGAATCTTATA
GTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCATGTATGTGGCAAAAT
ACGGGGATGACTTATGGCTAGTGGTGAAAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCC
CGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAAGGAAACTCCGAATACAAGCCTAGATAGTTTGTACAGAAAAACTTT
TGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAACCCAGATCATACGCTAAGT