Detailed information on CNT30157418


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30407349Pistacia veraBeta vulgaris14.1331.1589.4776reverse complement
CNT30606094Pistacia veraGossypium raimondii21.3830.2685.22115forward
CNT30367812Pistacia veraSorghum bicolor16.7343.0688.8990reverse complement

Expression of CNT30157418

Peptides detected in this lncRNA

>peptide 1 (78 aa)
YVYCFCICCESLQYSSYVKFVTPSLSFEGVYIQNLYKENNKIKGITIDMNRNFDILAIERCDCIVIAVDPVIPVISGI*

>peptide 2 (30 aa)
MDFPSFCRISPHQDLAKIKRKKKLKKKIIKF

>peptide 3 (31 aa)
MVIYIYIYILLLSYKFFLAYGRSFYYLINFS*

>peptide 4 (34 aa)
MGSIHGFSFLLSHFASSRFSKNKTEKEIKKKNYKI

Sequence

>CNT30157418
TTATGTCTACTGTTTTTGTATTTGTTGTGAGAGCTTACAATACAGTTCTTATGTAAAATTCGTAACCCCTTCCTTATCATTTGAAGGAGTTTATATACAA
AATTTATACAAAGAAAATAACAAAATTAAGGGGATTACAATTGATATGAATCGCAATTTTGATATTCTTGCGATTGAGCGCTGTGATTGCATAGTGATCG
CTGTTGATCCAGTTATTCCTGTAATATCTGGGATCTGAAGTAATATGAGGATTGATTGAATGGTTATATATATATATATATATATTCTTTTATTATCTTA
TAAATTTTTCCTAGCTTACGGTCGGTCCTTTTATTATCTTATAAATTTTTCCTAGCTTGCGGTCGGTCCGCAACCCCCAGATACTGAAGGCGTCATTGGG
GTGATCTTGTAGTTCCTACGGGGTGGAGACAATGGGATCAATCCATGGATTTTCCTTCCTTTTGTCGCATTTCGCCTCATCAAGATTTAGCAAAAATAAA
ACGGAAAAAGAAATTAAAAAAAAAAATTATAAAATTTA