Detailed information on CNT3015666


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001540, E-value = 3e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Zea maysOryza sativa3.4252.9488.89108forward
CNT30523179Zea maysSetaria italica3.4239.1384.26108forward
CNT30552159Zea maysOryza glaberrima3.4224.7188.89108forward
CNT30349956Zea maysEragrostis tef3.3941.3185.05107forward
CNT30596024Zea maysOryza meridionalis3.4240.1588.89108reverse complement
CNT30370879Zea maysOryza glumipatula3.4246.7588.89108reverse complement
CNT30102419Zea maysOryza rufipogon3.4235.8887.96108reverse complement
CNT30578082Zea maysOryza barthii3.3524.1588.68106forward

Expression of CNT3015666

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTNDLVDGSSAASAKKSKRAFPDVASTMT*

>peptide 2 (69 aa)
LQNNRAWPREILGWVTDRKVFPVHTSEDKLYTKESCWSVKMIYSSRGLPRVSTAGPGVDRVLHNITSIR*

>peptide 3 (30 aa)
MASMVHSLCRRSLHSGQQDSGGSGRVVFRK*

>peptide 4 (30 aa)
MSEGVEVYNWINYLLPSTYVFGLDWLVHPL*

>peptide 5 (34 aa)
MRPKVTTIEIFQNHLCSKGKASDLKYGIYGAQFV*

>peptide 6 (31 aa)
MQALSFKFRPLHLIRIKGIQFFFTCFFVYQI*

>peptide 7 (92 aa)
MDCMSFFGDHSMCPVVIDDCSCVCVSSTLRFYILNQLRFYWLGVGVLKLKPVVLNKVSTLGIVLRSVGLTICRIVPCLYKKIIASFFSISTC*

>peptide 8 (33 aa)
MLRLILGMIDRQFPLSFLSPFGQATTINNGFFQ*

>peptide 9 (35 aa)
MLQLVSIPLSRRSCCVSILDLENSCNRQAWLVISK*

>peptide 10 (29 aa)
MYKNISRFACKLPTCVIRQYFGTLKFIVM*

>peptide 11 (31 aa)
MVSRLDVSSLNSDKGFICVSIHLFSRLRFSL*

Sequence

>CNT3015666
CTTCAGAATAATCGTGCTTGGCCTAGAGAAATCTTGGGATGGGTGACCGACCGGAAAGTCTTCCCGGTGCACACGAGTGAGGACAAATTGTACACAAAAG
AATCGTGTTGGTCTGTGAAGATGATCTATAGTTCTAGAGGGCTGCCAAGAGTAAGTACCGCTGGTCCGGGAGTGGACAGGGTGTTACACAACATTACTAG
CATAAGATAAATATTCCCTTTGATTCAAAAGAACTTATGTTTAGCGCAATGACACAATCTACAATGCGAGATCAACCAACAATTTCTTTTAAAGTATGGC
ATTTCAAATAAAGGTAACATTAAGTAAGTACTTTAGTCATGATGGTCAGTAAAAAGGCTTGACCTGCAGGAATTCAGGTTTGACCTGCAGGAATTCAGAA
ACAACATACTTTTGGATAAGAGGGACTAAAAAACTTGACTAGGGGGGTAAGGCAACCCTTGGACATTACATTAAGAAGAATACCTTCTCACGCATATTGA
GAAAACCCCAGGACACCTATCTCACCCATACACAACGGGCGCCATAGTCCATGTGAGAACGACCGGGACCGAATCTTAGATCCGTTCTTTGGCGTGGGAC
AGAAGGGGGATTTTTTTAAAAAAAAACAGCATGAAATTCACTCCGACAGAGAGTCAAACCTAGGACCTGAGGTGTGCTACTCAGACCACTTAACCAACTC
AGCCAGAGACCCTTTCACTGGATAAGGACTAGCTTCTTAATTTTTGTACTTGGTGCACTAAGGTCTCCCTCACTGCTTTATTTTTTCTAACAAACACTTG
TCTATCTTTCATTTGTTAGAAACAACAAAAGAGTAGAGGCTTGTGAAGTTTCAATCACTCAGGTGGCAACTTTATACCGAGGCATGCTGCTTTTGGGTTC
AGAAGCATCCCAGCAGAACGACACATAGATATTGGATTCATCGATGAGGCCCTTCTCACTGATAGCTGCTTCTACTGCAGTTCTACCGAATCTTGTGTAT
GTTCCATTAAAGCCTTAATTTTCATGGACTGTATGAGTTTCTTTGGAGATCATAGCATGTGTCCAGTAGTAATCGATGATTGCTCTTGTGTTTGTGTCTC
ATCCACGTTAAGGTTTTACATACTAAACCAATTAAGGTTTTACTGGTTAGGAGTGGGAGTCTTAAAATTAAAGCCTGTTGTGCTCAACAAAGTATCTACT
TTGGGCATTGTACTTAGGTCAGTTGGCCTAACAATCTGTAGAATTGTGCCCTGTTTATATAAGAAAATAATAGCCAGCTTCTTTTCCATTTCAACATGCT
AAGGTTGATACTAGGTATGATAGACCGTCAGTTTCCGTTGTCCTTTCTGTCCCCCTTTGGGCAAGCAACTACAATCAACAATGGATTCTTCCAATAAATG
GCTGTGGATGTTTTGTAGTATTTGCTAGGCCACTAGCAGGAAAGAAAAAAACTGCTGTATGGCGCTGATCTGTAGTAAGTTCCAACTGTTTTTCAATTTT
GAACCTTGAAACCATGCTTGTATCAAATGGATGGTCAGGGAAACTACTTTTTTGTGGATTAAACAAGATCAAATAAAACGGCAGGCAAGCAGAGTATAAA
AGCACATATTAAAGTGTATAAGTGGATCGGCTACCTTCTCCCATCAGTTTAAGCTTTTGAGTTGAACTGATTAGTACATTCCCTCTAACATGGTATCAAG
GCTGGACGTCTCGAGTTTGAATTCTGACAAAGGTTTTATTTGTGTCTCCATCCATTTATTTTCACGTTTGCGCTTTTCTCTCTAGCTGCACATGAGTGAG
GGTGTTGAAGTGTATAATTGGATTAACTATCTTCTTCCATCAACTTATGTTTTTGGGTTGGACTGGTTAGTACATCCACTCTAACAGCACAATTGTGTGC
TGGAACTGGAAAGGCAAAATAAACCACATACCAATTGGTTAGTAGGTTTCCTTACCTCCATTGAGCCAAATGACCAATGATTTGGTAGATGGATCTTCAG
CAGCCTCTGCGAAGAAGTCAAAGAGGGCCTTTCCAGATGTTGCATCAACCATGACATAGCGGGCCGGCATACTGATCAAAGGCAGCCTTCTCGGGCTGCC
CAGGAAGCTCGCTGATATTATCAGCTTTCTTCAACCCATCTTGCAGGATATATTGGATGATCCATGCTCCAACTTGTAAGTATTCCATTGTCTAGACGAT
CATGTTGCGTCTCCATTCTTGACCTTGAAAACTCCTGCAATCGGCAAGCCTGGTTAGTCATCAGCAAGTGACATTTGTGCGAGCACAAGGCAGAACAATT
GGATGACAGATGCATCTCTTCTGAGCTTGGAGACCAAAGGAGAAATTGATACACTGGAATACTGGATCATGATATGACTAACTAACAACCATGAGGCAAT
AGATGATACTTAAATGCACATAGGTACAAATGTGTACTTGTGTAGTGTCTTGATTGTTTAAATCTTGTGTTCCAACATTTAATACCTTGCTCGATTAGTT
GGGTTCATCCAGTGGTAAAACTAAGGTGTATATAGATGTATAAAAATATAAGTCGGTTTGCTTGCAAGCTGCCAACGTGTGTTATCAGGCAATACTTTGG
TACTCTGAAGTTCATTGTGATGTGACTGTGCTGCATCTGTTCCATCCAAGCACAAAAGGGGGAACGGGGATCTACACGGAGGACTGATTTTGCAGCATCT
GTCAAGCAAGCAAGAAGTGGTCATAGCGACCGAAATATCTGGAACCTGTGTTGTTAATTGAAGAGCATACAAGTCATAAGAGCGATTGGTTCGTAGCTGC
ATTCTCGCTGGAAGAAGATTGGAATGCTGTCGCTGGAAGACGAGTAAAAGATGAAAAATCCAGCTATGGCTATAAGATTGGAATGCGCCCCAAAGTGACC
ACAATAGAAATATTTCAAAATCACCTCTGCAGTAAAGGAAAAGCATCAGACTTAAAATATGGCATCTATGGTGCACAGTTTGTGTAGAAGAAGTTTGCAT
AGCGGGCAGCAAGACAGCGGCGGCTCAGGGCGTGTTGTGTTCCGAAAATGAATAGAGGATGCAAGCTTTGAGTTTTAAATTTAGACCTCTGCATCTAATA
CGTATTAAAGGTATACAATTTTTCTTCACCTGTTTTTTCGTCTACCAAATATAAAAAAGCA