CANTATAdb - search

Detailed information on CNT3015653

BLAST search results

BLAST vs Swiss-Prot:
sp|P31853|ATPF2_SPIOL, E-value = 2e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30521960	Zea mays	Setaria italica	64.11	49.94	94.28	402	forward
CNT30703592	Zea mays	Quercus lobata	14.19	20.18	83.15	89	forward
CNT30294789	Zea mays	Triticum aestivum	62.68	58.22	89.06	393	forward
CNT30115784	Zea mays	Oryza nivara	29.98	78.66	91.49	188	forward

Expression of CNT3015653

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSSRNSVAIAGSVRLKSNSAAFSICSASAGSGGGHRLQARRGAARGAGGGGCNHQSRGHGCEAGER*

>peptide 2 (40 aa)
MMAAAWSSSCFTSSEAPLTSPSSPRILASRSSMNLPSGVK*

Sequence

>CNT3015653
GCCAATTTCTTCAAAATTATCATTAATTTATGATGTTCATGTAACTATAGTCGTAGGATAAGGCAGGGCCGGTTTGGTTTCATCACGCGGATGGGAGCAC
CTTCTTGACGATCTCATCACTGAGCGAGGCGATCTGGGCGTCGAGCGCCTTAACAGCCTCCTCCTTCTGCGCCTCGAGCTCCGCGGTGGTCTCCTTCTTC
ATCTTGTTAAGCGCCGCCGCGATCTCGGCGCGCGCCGCCTTCATGATGGCCGCCGCCTGGTCCTCCAGCTGCTTCACCTCCTCGGAGGCGCCCTTGACAT
CGCCGAGCTCACCGCGGATCTTGGCGTCCCGCTCATCCATGAACTTGCCTAGCGGCGTGAAGTAGAGCTTGTCCAGCGCCACCATGAGCAGCAGGAACTC
GGTCGCGATCGCCGGGAGCGTCAGGTTGAAGTCAAACAGTGCGGCCTTCTCCATCTGCTCCGCCAGCGCCGGGAGCGGAGGAGGCCACCGGCTTCAGGCG
CGGCGCGGCGCGGCCCGGGGAGCAGGAGGTGGTGGCTGCAACCATCAAAGCCGTGGCCATGGGTGCGAGGCCGGGGAGAGGTAGGTGGAAGAGCGGCGGC
GGCTTGTCAGTGGAGGACTGGAGGTGT