Detailed information on CNT30156417


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF43|KCS6_ARATH, E-value = 7e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3029107Pistacia veraTheobroma cacao10.3120.2787.5104forward

Expression of CNT30156417

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MQSAQGPSTGVLMVLLHFQTALLHLNPLPKAICQTLSPFFILPFDST*

>peptide 2 (43 aa)
MRVKRNNSCSDAKYKSPIVVMLDFKASPAIAMRSLDNEIPTLPS

>peptide 3 (31 aa)
MKMMCFRIDAVSFLRLPRAPLRAANSFAIHL*

>peptide 4 (29 aa)
MTNSVNLSSMKYNISHIPSRFITKASCFS*

>peptide 5 (50 aa)
MDTEVFKSLLEVRNIRFPLRVKNFTADESKKKQQLLGCEVQESHRCDVGL*

>peptide 6 (50 aa)
MYRVSIDAIRPRPIDWCLDGFVTLPNSTVAFKPTAKSNLPNSFSLLHPPL*

Sequence

>CNT30156417
TGAATATATGGCGTACTGAATTTTACCAAATTTTCCATGTACAACAAAAATGACTAATTCAGTCAACTTATCATCGATGAAATACAACATTTCCCATATA
CCTTCTAGGTTTATTACAAAGGCTTCTTGTTTTTCCTGAAATAACAGCAGTTACAATGTGTTTTTTCTTACATGGTTGAGACATTAAACACAAGAAGGGG
CCTTGGGCTGTCTATATATACAGATACATAATAGTTGTAAAGAAAAAAAAGAAAAAATAAAAAGATTGTGGAAGCTAGAAGACATATAAGAAGAGCCAAT
AAGAATTAATACATGCAGGAGAGAAGTAAATGCACATCCCAGATAAATATTATGACTTTTAATAAAGTAACTTAAACAAAGAAGCAAACCCTTGAATCAA
GCCTTGTGATAGTGGTTTTTCTCTTAATCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACTTTTTGTGGCGTCAGAGCTTGACAATTTCCGGA
ATATGTACAGGGTATCGATCGATGCAATCCGCCCAAGGCCCATCGACTGGTGTCTTGATGGTTTTGTTACACTTCCAAACAGCACTGTTGCATTTAAACC
CACTGCCAAAAGCAATCTGCCAAACTCTTTCTCCCTTCTTCATCCTCCCCTTTGATTCAACATAGCTCAATTCGTACCAAAGAGATGAAGATGATGTGTT
TCCGAATCGATGCAGTGTCATTCTTGAGGCTTCCACGTGCTCCGCTGAGAGCTGCAAATTCTTTTGCAATTCATCTATGACTGCTCTTCCACCCGCATGG
ATACAGAAGTGTTCAAAAGCCTGCTTGAAGTCAGGAATATAAGGTTTCCACTTAGGGTTAAAAATTTTACGGCCGATGAGAGTAAAAAGAAACAACAGTT
GCTCGGATGCGAAGTACAAGAGTCCCATCGTTGTGATGTTGGACTTTAAAGCCTCTCCTGCTATTGCCATGAGATCTTTGGACAATGAAATCCCTACTTT
GCCCTCTTT