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Detailed information on CNT30156309


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 3e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30114130Pistacia veraFicus carica67.0279.6282.8500forward

Expression of CNT30156309

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MSINSPITVRQNCLSRRDYFKHWLLNSGNWIRTNDDSSCTITKQGLTHKTVKVGVTRTTESNSSNF*

>peptide 2 (35 aa)
MSINSPITVRQNCLNASTKLFSMFFEISPGTSFKR*

>peptide 3 (31 aa)
SSNTVEDDCLNSKSRPESEENSPFKTFSCGL*

>peptide 4 (78 aa)
AVATLWRTTVSTVSPGPNPKRTPHSRPSPVVFNPFSVDFLLISSKINKTQALDMLPYSESTCLVAPNFSSLRPSLIST*

Sequence

>CNT30156309
GCAGTAGCAACACTGTGGAGGACGACTGTCTCAACAGTAAGTCCAGGCCCGAATCCGAAGAGAACTCCCCATTCAAGACCTTCTCCTGTGGTCTTTAATC
CATTTTCAGTTGATTTCCTTCTCATTTCGTCCAAAATAAACAAGACACAGGCGCTTGACATGTTACCGTATTCGGAAAGCACATGTCTTGTGGCACCTAA
CTTCTCTTCCTTAAGGCCCAGTTTGATTTCAACTTGATCCAAAATTGCCGGACCACCAGGGTGTGCAATCCAGAAAAGTGAGTTCCAATCTGAGATACCC
AATGGTTTGAATGCCTCAACCAAACTCTTCTCAATGTTCTTTGAAATAAGCCCGGGAACATCTTTCAAAAGGTGAAATGTAAGCCCAACTTCACGAAGAT
GTCCATCAATAGCCCCATCACTGTCAGGCAAAATTGTTTGAATGCCTCAACCAAACTCTTCTCAATGTTCTTTGAAATAAGCCCGGGAACATCTTTCAAA
AGGTGAAATGTAAGCCCAACTTCACGAAGATGTCCATCAATAGCCCCATCACTGTCAGGCAAAATTGTTTGAGCCGTAGAGACTATTTCAAACATTGGCT
TCTCAACTCCGGGAACTGGATCAGAACCAACGATGACAGCAGCTGCACCATCACCAAACAAGGCTTGACCCACAAGACTGTCAAGGTGGGTGTCACTAGG
ACCACGGAAAGTAACAGCAGTAATTTCTGAGCAGACAACAAGGACA