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Detailed information on CNT30156272


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30281985Pistacia veraChenopodium quinoa21.613.9579.28333forward
CNT30381108Pistacia veraManihot esculenta21.1458.4281.6326forward
CNT30524897Pistacia veraPhaseolus vulgaris30.6777.0481.4473forward
CNT30628839Pistacia veraVigna unguiculata44.4960.3380.32686forward
CNT30195402Pistacia veraPisum sativum49.8152.6479.95768forward
CNT30507146Pistacia veraNicotiana attenuata20.7530.0880320forward
CNT3045126Pistacia veraPrunus dulcis31.5847.4783.37487forward
CNT3096581Pistacia veraSolanum tuberosum28.1523.2379.72434forward
CNT30564019Pistacia veraActinidia chinensis19.2640.0883.84297forward
CNT3087878Pistacia veraVigna radiata54.8654.1378.72846forward
CNT30143557Pistacia veraMedicago truncatula49.8173.3580.08768forward
CNT3074040Pistacia veraBrassica juncea16.4157.2481.42253forward
CNT30469647Pistacia veraSaccharum spontaneum6.8152.582.86105forward
CNT30610101Pistacia veraGossypium raimondii64.0737.983988forward
CNT30151821Pistacia veraPrunus persica31.9785.5983.37493forward
CNT30705527Pistacia veraPrunus avium16.9956.5980.92262forward
CNT30644974Pistacia veraCannabis sativa34.8266.8781.75537forward
CNT30114123Pistacia veraFicus carica47.645.6882.43734forward

Expression of CNT30156272

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MYSQTFGFSFKISSVKYMYRFLIMDFSPEIHDKRSSV*

>peptide 2 (29 aa)
HTSLKGNNINPNNMEKTEKSMKMKNRINK*

>peptide 3 (38 aa)
MTLLPILVDTTMLSYLFHSNYNSSGILSPNCLPSIISKR

>peptide 4 (38 aa)
MRNISAQNKQKTEKRKENDSFAYFGRYNYAILFISFQL*

>peptide 5 (66 aa)
MSINSPITVRQNCLSRRDYFKHWLLNSGNWIRTNDDSSCTITKQGLTHKTVKVGVTRTTESNSSNF*

Sequence

>CNT30156272
GTCATACATCTTTGAAGGGAAATAATATAAATCCAAATAACATGGAAAAAACAGAAAAGTCAATGAAAATGAAAAATCGAATCAATAAATGAAATCTTTT
AAGCAGTAGCAACACTGTGGAGGACGACTGTCTCAACAGTAAGTCCAGGCCCGAATCCGAAGAGAACTCCCCATTCAAGACCTTCTCCTGTGGTCTTTAA
TCCATTTTCAGTTGATTTCCTTCTCATTTCGTCCAAAATAAACAAGACACAGGCGCTTGACATGTTACCGTATTCGGAAAGCACATGTCTTGTGGCACCT
AACTTCTCTTCCTTAAGGCCCAGTTTGATTTCAACTTGATCCAAAATTGCCGGACCACCAGGGTGTGCAATCCAGAAAAGTGAGTTCCAATCTGAGATAC
CCAATGGTTTGAATGCCTCAACCAAACTCTTCTCAATGTTCTTTGAAATAAGCCCGGGAACATCTTTCAAAAGGTGAAATGTAAGCCCAACTTCACGAAG
ATGTCCATCAATAGCCCCATCACTGTCAGGCAAAATTGTTTGAGCCGTAGAGACTATTTCAAACATTGGCTTCTCAACTCCGGGAACTGGATCAGAACCA
ACGATGACAGCAGCTGCACCATCACCAAACAAGGCTTGACCCACAAGACTGTCAAGGTGGGTGTCACTAGGACCACGGAAAGTAACAGCAGTAATTTCTG
AGCAGACAACAAGGACACGAGCACCTTTGTTGTTCTCTGCTAAATCTTTGGCAAGGCGAAGAACCGTGCCACCAGCAAAGCAACCTTGTTGGTACATCAT
GTAACGCTTAACAGAAGGACGAAGACCCAAGAGCTTGGTGAGCTGGTAGTCAGCACCAGGCATGTCAACACCACTGGTGGTGCAAAACACCAAGTGGGTG
ATTTTGGATTTGGGCTGACCCCATTCCTTAATAGCCTTGGTGGCTGCTTCTTTGCCTAGCTTTGGTACCTCGACCACCACCATATCTTGCCTGGCATCTA
GTGAAGGTGCCATGTATTCGCAAACTTTTGGGTTTTCTTTCAAAATCTCCTCGGTCAAGTACATGTATCGCTTCTTGATCATGGATTTTTCACCTGAAAT
ACATGACAAAAGAAGTTCAGTTTAAATATATTGATGCAAAACGAGTATAGTATCATATTAGTATGGTAATATCTTGATTTAAAGCTTACTAGGTTGATGA
GGATAAAATGATTTTATGGAAATTATTGTAGTGTTAATTATCATGATAGATCATCTTAAGTGTAGCAGTATATTTTTTTTTGTCTATTGAGTCGGAAATA
CAAAAAAATTCATTTTGTTTTTAAGGGTATACTGTTAACTTTAGAGTTTTGACTTTTGACTAATGGGTTGGATATGAGAAATATTTCTGCCCAAAATAAA
CAAAAAACAGAGAAAAGAAAAGAAAATGACTCTTTTGCCTATTTTGGTAGATACAACTATGCTATCTTATTTATTTCATTCCAATTATAATTCATCTGGA
ATATTATCTCCTAACTGTCTCCCTTCAATTATTTCTAAAAGG